Analysis of interatomic Contacts of Structural Units in PDB entry:
1DJ3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DJ3 entry

There are 2 chains in PDB entry 1DJ3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 11LYS 442
B
 ALA 11LYS 442
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 1DJ3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 16Right-handed 310
Helix 2
2
A
32 41Right-handed alpha
Helix 3
3
A
42 44Right-handed 310
Helix 4
4
A
74 79Right-handed 310
Helix 5
5
A
93 106Right-handed alpha
Helix 6
6
A
125 139Right-handed alpha
Helix 7
7
A
150 160Right-handed alpha
Helix 8
8
A
166 170Right-handed 310
Helix 9
9
A
171 190Right-handed alpha
Helix 10
10
A
196 215Right-handed alpha
Helix 11
11
A
220 231Right-handed alpha
Helix 12
12
A
244 246Right-handed 310
Helix 13
13
A
262 270Right-handed alpha
Helix 14
14
A
272 276Right-handed 310
Helix 15
15
A
301 312Right-handed alpha
Helix 16
16
A
329 340Right-handed alpha
Helix 17
17
A
348 353Right-handed 310
Helix 18
18
A
378 383Right-handed alpha
Helix 19
19
A
409 424Right-handed alpha
Helix 20
20
B
12 16Right-handed 310
Helix 21
21
B
32 41Right-handed alpha
Helix 22
22
B
42 44Right-handed 310
Helix 23
23
B
74 79Right-handed 310
Helix 24
24
B
93 106Right-handed alpha
Helix 25
25
B
125 139Right-handed alpha
Helix 26
26
B
150 160Right-handed alpha
Helix 27
27
B
166 170Right-handed 310
Helix 28
28
B
171 190Right-handed alpha
Helix 29
29
B
196 215Right-handed alpha
Helix 30
30
B
220 231Right-handed alpha
Helix 31
31
B
244 246Right-handed 310
Helix 32
32
B
262 270Right-handed alpha
Helix 33
33
B
272 276Right-handed 310
Helix 34
34
B
301 312Right-handed alpha
Helix 35
35
B
329 340Right-handed alpha
Helix 36
36
B
348 353Right-handed 310
Helix 37
37
B
378 383Right-handed alpha
Helix 38
38
B
409 424Right-handed alpha
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There are 12 sheets in PDB entry 1DJ3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 219first strand
Strand 2
A
115 118parallel
Strand 3
A
83 86parallel
Strand 4
A
46 49parallel
Strand 5
A
235 242parallel
Strand 6
A
20 25parallel
Strand 7
A
279 284parallel
Strand 8
A
343 347parallel
Strand 9
A
429 431parallel
Strand 10
A
439 441anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 61first strand
Strand 2
A
67 70anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 92first strand
Strand 2
A
122 123parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 289first strand
Strand 2
A
323 328anti-parallel
Strand 3
A
360 361parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 358first strand
Strand 2
A
392 393anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 365first strand
Strand 2
A
386 388anti-parallel
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There are 10 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
218 219first strand
Strand 2
B
115 118parallel
Strand 3
B
83 86parallel
Strand 4
B
46 49parallel
Strand 5
B
235 242parallel
Strand 6
B
20 25parallel
Strand 7
B
279 284parallel
Strand 8
B
343 347parallel
Strand 9
B
427 431parallel
Strand 10
B
439 441anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 61first strand
Strand 2
B
67 70anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 92first strand
Strand 2
B
122 123parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
286 289first strand
Strand 2
B
323 328anti-parallel
Strand 3
B
360 361parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
357 358first strand
Strand 2
B
392 393anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
363 365first strand
Strand 2
B
386 388anti-parallel
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