Analysis of interatomic Contacts of Structural Units in PDB entry:
1DJO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DJO entry

There are 2 chains in PDB entry 1DJO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1008TYR 1337
B
 LYS 3008TYR 3337
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 1DJO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1040 1048Right-handed alpha
Helix 2
2
A
1050 1054Right-handed alpha
Helix 3
3
A
1066 1070Right-handed 310
Helix 4
4
A
1071 1088Right-handed alpha
Helix 5
5
A
1102 1114Right-handed alpha
Helix 6
6
A
1135 1148Right-handed alpha
Helix 7
7
A
1149 1153Right-handed 310
Helix 8
8
A
1207 1211Right-handed 310
Helix 9
9
A
1214 1218Right-handed 310
Helix 10
10
A
1235 1244Right-handed alpha
Helix 11
11
A
1263 1273Right-handed alpha
Helix 12
12
A
1296 1301Right-handed alpha
Helix 13
13
A
1309 1321Right-handed alpha
Helix 14
14
A
1326 1337Right-handed alpha
Helix 15
15
B
3020 3023Right-handed 310
Helix 16
16
B
3040 3047Right-handed alpha
Helix 17
17
B
3048 3053Right-handed 310
Helix 18
18
B
3066 3070Right-handed 310
Helix 19
19
B
3071 3088Right-handed alpha
Helix 20
20
B
3102 3114Right-handed alpha
Helix 21
21
B
3135 3148Right-handed alpha
Helix 22
22
B
3149 3153Right-handed 310
Helix 23
23
B
3207 3211Right-handed 310
Helix 24
24
B
3235 3244Right-handed alpha
Helix 25
25
B
3263 3273Right-handed alpha
Helix 26
26
B
3296 3301Right-handed alpha
Helix 27
27
B
3309 3321Right-handed alpha
Helix 28
28
B
3326 3337Right-handed alpha
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There are 7 sheets in PDB entry 1DJO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1055 1065first strand
Strand 2
A
1010 1018parallel
Strand 3
A
1093 1097parallel
Strand 4
A
1120 1123parallel
Strand 5
A
1158 1161parallel
Strand 6
A
1164 1167anti-parallel
Strand 7
A
1190 1193anti-parallel
Strand 8
A
1196 1199anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1172 1173first strand
Strand 2
A
1182 1183anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1224 1228first strand
Strand 2
A
1248 1253parallel
Strand 3
A
1276 1281parallel
Strand 4
A
1303 1304parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3055 3065first strand
Strand 2
B
3010 3018parallel
Strand 3
B
3093 3097parallel
Strand 4
B
3120 3123parallel
Strand 5
B
3158 3161parallel
Strand 6
B
3164 3167anti-parallel
Strand 7
B
3190 3193anti-parallel
Strand 8
B
3196 3199anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3024 3025first strand
Strand 2
B
3034 3035anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3171 3173first strand
Strand 2
B
3182 3184anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3224 3228first strand
Strand 2
B
3248 3253parallel
Strand 3
B
3276 3281parallel
Strand 4
B
3303 3304parallel
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