Analysis of interatomic Contacts of Structural Units in PDB entry:
1DJU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DJU entry

There are 2 chains in PDB entry 1DJU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2VAL 389
B
 ALA 2VAL 389
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 1DJU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 9Right-handed alpha
Helix 2
2
A
41 55Right-handed alpha
Helix 3
3
A
65 81Right-handed alpha
Helix 4
4
A
95 97Right-handed 310
Helix 5
5
A
98 105Right-handed alpha
Helix 6
6
A
123 132Right-handed alpha
Helix 7
7
A
141 145Right-handed 310
Helix 8
8
A
149 157Right-handed alpha
Helix 9
9
A
178 193Right-handed alpha
Helix 10
10
A
214 218Right-handed 310
Helix 11
11
A
221 223Right-handed 310
Helix 12
12
A
237 241Right-handed 310
Helix 13
13
A
248 260Right-handed alpha
Helix 14
14
A
267 279Right-handed alpha
Helix 15
15
A
280 308Right-handed alpha
Helix 16
16
A
325 329Right-handed 310
Helix 17
17
A
331 344Right-handed alpha
Helix 18
18
A
351 358Right-handed 310
Helix 19
19
A
368 386Right-handed alpha
Helix 20
20
B
2 9Right-handed alpha
Helix 21
21
B
41 54Right-handed alpha
Helix 22
22
B
65 81Right-handed alpha
Helix 23
23
B
97 105Right-handed alpha
Helix 24
24
B
123 132Right-handed alpha
Helix 25
25
B
141 145Right-handed 310
Helix 26
26
B
149 157Right-handed alpha
Helix 27
27
B
178 192Right-handed alpha
Helix 28
28
B
214 218Right-handed 310
Helix 29
29
B
221 223Right-handed 310
Helix 30
30
B
237 241Right-handed 310
Helix 31
31
B
248 260Right-handed alpha
Helix 32
32
B
267 279Right-handed alpha
Helix 33
33
B
280 308Right-handed alpha
Helix 34
34
B
325 329Right-handed 310
Helix 35
35
B
331 343Right-handed alpha
Helix 36
36
B
351 358Right-handed 310
Helix 37
37
B
368 386Right-handed alpha
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There are 6 sheets in PDB entry 1DJU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 30first strand
Strand 2
A
345 346parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 93first strand
Strand 2
A
243 246anti-parallel
Strand 3
A
225 230anti-parallel
Strand 4
A
195 199parallel
Strand 5
A
161 167parallel
Strand 6
A
113 118parallel
Strand 7
A
134 139parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 321first strand
Strand 2
A
361 364anti-parallel
Strand 3
A
348 349anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 30first strand
Strand 2
B
345 346parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 93first strand
Strand 2
B
243 246anti-parallel
Strand 3
B
225 230anti-parallel
Strand 4
B
195 199parallel
Strand 5
B
161 167parallel
Strand 6
B
113 118parallel
Strand 7
B
134 139parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
320 321first strand
Strand 2
B
361 364anti-parallel
Strand 3
B
348 349anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il