Analysis of interatomic Contacts of Structural Units in PDB entry:
1DKG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DKG entry

There are 3 chains in PDB entry 1DKG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 34ALA 197
B
 ASP 38ALA 195
D
 LYS 3THR 383
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 1DKG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 85Right-handed alpha
Helix 2
2
A
88 94Right-handed 310
Helix 3
3
A
96 107Right-handed alpha
Helix 4
4
A
117 134Right-handed alpha
Helix 5
5
B
41 106Right-handed alpha
Helix 6
6
B
117 137Right-handed alpha
Helix 7
7
D
52 57Right-handed alpha
Helix 8
8
D
59 64Right-handed 310
Helix 9
9
D
69 71Right-handed 310
Helix 10
10
D
80 85Right-handed alpha
Helix 11
11
D
112 131Right-handed alpha
Helix 12
12
D
148 161Right-handed alpha
Helix 13
13
D
171 179Right-handed alpha
Helix 14
14
D
229 248Right-handed alpha
Helix 15
15
D
256 274Right-handed alpha
Helix 16
16
D
302 308Right-handed alpha
Helix 17
17
D
310 325Right-handed alpha
Helix 18
18
D
342 345Right-handed 310
Helix 19
19
D
347 356Right-handed alpha
Helix 20
20
D
370 378Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 1DKG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 142first strand
Strand 2
A
177 180anti-parallel
Strand 3
A
183 186anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 156first strand
Strand 2
A
188 192parallel
Strand 3
A
170 173anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 161first strand
Strand 2
A
192 194parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 142first strand
Strand 2
B
177 180anti-parallel
Strand 3
B
183 186anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 161first strand
Strand 2
B
188 194parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 8first strand
Strand 2
D
13 17anti-parallel
Strand 3
D
35 37anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
17 20first strand
Strand 2
D
23 26anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
65 67first strand
Strand 2
D
39 42anti-parallel
Strand 3
D
48 50anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
92 95first strand
Strand 2
D
101 105anti-parallel
Strand 3
D
108 111anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
336 340first strand
Strand 2
D
187 195parallel
Strand 3
D
200 208anti-parallel
Strand 4
D
217 224anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
278 283first strand
Strand 2
D
296 301anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
287 289first strand
Strand 2
D
292 294anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il