Analysis of interatomic Contacts of Structural Units in PDB entry:
1DKP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DKP entry

There is 1 chain in PDB entry 1DKP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1LEU 410
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 1DKP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 32Right-handed alpha
Helix 2
2
A
48 69Right-handed alpha
Helix 3
3
A
90 105Right-handed alpha
Helix 4
4
A
122 126Right-handed 310
Helix 5
5
A
136 148Right-handed alpha
Helix 6
6
A
151 158Right-handed alpha
Helix 7
7
A
159 171Right-handed alpha
Helix 8
8
A
172 174Right-handed 310
Helix 9
9
A
175 180Right-handed alpha
Helix 10
10
A
189 194Right-handed alpha
Helix 11
11
A
209 228Right-handed alpha
Helix 12
12
A
231 236Right-handed 310
Helix 13
13
A
239 258Right-handed alpha
Helix 14
14
A
260 280Right-handed alpha
Helix 15
15
A
288 290Right-handed 310
Helix 16
16
A
303 315Right-handed alpha
Helix 17
17
A
356 362Right-handed alpha
Helix 18
18
A
393 404Right-handed alpha
Helix 19
19
A
405 409Right-handed 310
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There are 4 sheets in PDB entry 1DKP. Click on sheet of interest to get list of strands forming it: A, A1, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 113first strand
Strand 2
A
83 87parallel
Strand 3
A
297 302parallel
Strand 4
A
6 16parallel
Strand 5
A
332 340anti-parallel
Strand 6
A
346 354anti-parallel
Strand 7
A
373 377anti-parallel
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There are 7 strands in A1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 113first strand
Strand 2
A
83 87parallel
Strand 3
A
297 302parallel
Strand 4
A
6 16parallel
Strand 5
A
332 340anti-parallel
Strand 6
A
346 354anti-parallel
Strand 7
A
391 392anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 200first strand
Strand 2
A
205 207anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 286first strand
Strand 2
A
292 293anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il