Analysis of interatomic Contacts of Structural Units in PDB entry:
1DL2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DL2 entry

There is 1 chain in PDB entry 1DL2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 34LEU 549
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1DL2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 57Right-handed alpha
Helix 2
2
A
83 98Right-handed alpha
Helix 3
3
A
101 119Right-handed alpha
Helix 4
4
A
130 152Right-handed alpha
Helix 5
5
A
155 172Right-handed alpha
Helix 6
6
A
173 176Right-handed 310
Helix 7
7
A
198 202Right-handed 310
Helix 8
8
A
205 209Right-handed alpha
Helix 9
9
A
211 223Right-handed alpha
Helix 10
10
A
224 233Right-handed alpha
Helix 11
11
A
234 243Right-handed alpha
Helix 12
12
A
243 249Right-handed alpha
Helix 13
13
A
274 289Right-handed alpha
Helix 14
14
A
290 308Right-handed alpha
Helix 15
15
A
338 340Right-handed 310
Helix 16
16
A
341 352Right-handed alpha
Helix 17
17
A
355 360Right-handed alpha
Helix 18
18
A
366 391Right-handed alpha
Helix 19
19
A
424 428Right-handed 310
Helix 20
20
A
434 448Right-handed alpha
Helix 21
21
A
450 467Right-handed alpha
Helix 22
22
A
497 503Right-handed alpha
Helix 23
23
A
503 512Right-handed alpha
Helix 24
24
A
534 541Right-handed alpha
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There are 8 sheets in PDB entry 1DL2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
69 71anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 129first strand
Strand 2
A
185 187anti-parallel
Strand 3
A
193 194anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 204first strand
Strand 2
A
255 256anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 311first strand
Strand 2
A
318 320anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 336first strand
Strand 2
A
400 403anti-parallel
Strand 3
A
421 423anti-parallel
Strand 4
A
414 415anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
468 469first strand
Strand 2
A
478 479anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
482 484first strand
Strand 2
A
491 492anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
521 523first strand
Strand 2
A
529 531anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il