Analysis of interatomic Contacts of Structural Units in PDB entry:
1DLD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DLD entry

There is 1 chain in PDB entry 1DLD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1DLD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 19Right-handed alpha
Helix 2
2
A
35 42Right-handed alpha
Helix 3
3
A
60 64Right-handed alpha
Helix 4
4
A
81 83Right-handed 310
Helix 5
5
A
86 92Right-handed alpha
Helix 6
6
A
104 118Right-handed alpha
Helix 7
7
A
158 168Right-handed alpha
Helix 8
8
A
193 199Right-handed alpha
Helix 9
9
A
219 224Right-handed alpha
Helix 10
10
A
242 251Right-handed alpha
Helix 11
11
A
303 322Right-handed alpha
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There are 3 sheets in PDB entry 1DLD. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
45 48parallel
Strand 3
A
73 76parallel
Strand 4
A
95 97parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 175first strand
Strand 2
A
147 152parallel
Strand 3
A
202 205parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 233first strand
Strand 2
A
257 259parallel
Strand 3
A
292 294parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il