Analysis of interatomic Contacts of Structural Units in PDB entry:
1DLJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DLJ entry

There is 1 chain in PDB entry 1DLJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 402
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1DLJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 20Right-handed alpha
Helix 2
2
A
31 40Right-handed alpha
Helix 3
3
A
47 57Right-handed alpha
Helix 4
4
A
66 74Right-handed alpha
Helix 5
5
A
94 108Right-handed alpha
Helix 6
6
A
122 131Right-handed alpha
Helix 7
7
A
149 154Right-handed alpha
Helix 8
8
A
167 185Right-handed alpha
Helix 9
9
A
196 228Right-handed alpha
Helix 10
10
A
231 241Right-handed alpha
Helix 11
11
A
259 273Right-handed alpha
Helix 12
12
A
278 303Right-handed alpha
Helix 13
13
A
329 340Right-handed alpha
Helix 14
14
A
366 374Right-handed alpha
Helix 15
15
A
383 390Right-handed 310
Helix 16
16
A
389 391Right-handed 310
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There are 4 sheets in PDB entry 1DLJ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 64first strand
Strand 2
A
24 28parallel
Strand 3
A
2 6parallel
Strand 4
A
76 79parallel
Strand 5
A
112 115parallel
Strand 6
A
136 138parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
91 92anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 161first strand
Strand 2
A
192 195parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
362 363first strand
Strand 2
A
344 348parallel
Strand 3
A
311 315parallel
Strand 4
A
376 378parallel
Strand 5
A
393 394parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il