Analysis of interatomic Contacts of Structural Units in PDB entry:
1DMJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DMJ entry

There are 2 chains in PDB entry 1DMJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 67TRP 482
B
 LYS 69TRP 482
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 1DMJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
85 90Right-handed 310
Helix 2
2
A
121 140Right-handed alpha
Helix 3
3
A
145 163Right-handed alpha
Helix 4
4
A
168 183Right-handed alpha
Helix 5
5
A
188 192Right-handed 310
Helix 6
6
A
205 222Right-handed alpha
Helix 7
7
A
223 225Right-handed 310
Helix 8
8
A
269 279Right-handed alpha
Helix 9
9
A
308 312Right-handed 310
Helix 10
10
A
322 329Right-handed 310
Helix 11
11
A
361 366Right-handed alpha
Helix 12
12
A
366 371Right-handed alpha
Helix 13
13
A
377 385Right-handed alpha
Helix 14
14
A
391 394Right-handed 310
Helix 15
15
A
395 415Right-handed alpha
Helix 16
16
A
421 441Right-handed alpha
Helix 17
17
A
446 451Right-handed alpha
Helix 18
18
A
455 459Right-handed 310
Helix 19
19
A
459 463Right-handed 310
Helix 20
20
B
85 90Right-handed 310
Helix 21
21
B
121 140Right-handed alpha
Helix 22
22
B
145 163Right-handed alpha
Helix 23
23
B
168 182Right-handed alpha
Helix 24
24
B
188 192Right-handed 310
Helix 25
25
B
205 222Right-handed alpha
Helix 26
26
B
223 225Right-handed 310
Helix 27
27
B
269 279Right-handed alpha
Helix 28
28
B
322 329Right-handed 310
Helix 29
29
B
361 366Right-handed alpha
Helix 30
30
B
366 371Right-handed alpha
Helix 31
31
B
377 385Right-handed alpha
Helix 32
32
B
391 394Right-handed 310
Helix 33
33
B
395 415Right-handed alpha
Helix 34
34
B
421 441Right-handed alpha
Helix 35
35
B
446 451Right-handed alpha
Helix 36
36
B
455 459Right-handed 310
Back to top of page

There are 15 sheets in PDB entry 1DMJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 74first strand
Strand 2
A
81 83anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 101first strand
Strand 2
B
468 469anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 199first strand
Strand 2
A
229 232parallel
Strand 3
A
355 356anti-parallel
Strand 4
A
337 338anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 245first strand
Strand 2
A
293 296anti-parallel
Strand 3
A
303 305anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 257first strand
Strand 2
A
263 265anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 316first strand
Strand 2
A
331 333anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 350first strand
Strand 2
A
342 345anti-parallel
Strand 3
A
474 476anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 360first strand
Strand 2
A
419 420parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 74first strand
Strand 2
B
81 83anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 199first strand
Strand 2
B
229 232parallel
Strand 3
B
355 356anti-parallel
Strand 4
B
337 338anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
244 245first strand
Strand 2
B
293 296anti-parallel
Strand 3
B
303 305anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 256first strand
Strand 2
B
264 265anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
314 316first strand
Strand 2
B
331 333anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
348 350first strand
Strand 2
B
342 345anti-parallel
Strand 3
B
474 476anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
359 360first strand
Strand 2
B
419 420parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il