Analysis of interatomic Contacts of Structural Units in PDB entry:
1DMS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DMS entry

There is 1 chain in PDB entry 1DMS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3GLU 781
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 1DMS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 50Right-handed 310
Helix 2
2
A
62 67Right-handed alpha
Helix 3
3
A
73 75Right-handed 310
Helix 4
4
A
86 104Right-handed alpha
Helix 5
5
A
125 136Right-handed alpha
Helix 6
6
A
151 158Right-handed alpha
Helix 7
7
A
171 177Right-handed alpha
Helix 8
8
A
188 192Right-handed alpha
Helix 9
9
A
203 213Right-handed alpha
Helix 10
10
A
226 231Right-handed alpha
Helix 11
11
A
243 256Right-handed alpha
Helix 12
12
A
262 268Right-handed alpha
Helix 13
13
A
272 279Right-handed alpha
Helix 14
14
A
290 297Right-handed alpha
Helix 15
15
A
301 311Right-handed alpha
Helix 16
16
A
323 325Right-handed 310
Helix 17
17
A
331 344Right-handed 310
Helix 18
18
A
399 401Right-handed 310
Helix 19
19
A
402 407Right-handed alpha
Helix 20
20
A
435 439Right-handed alpha
Helix 21
21
A
442 448Right-handed alpha
Helix 22
22
A
449 451Right-handed 310
Helix 23
23
A
464 468Right-handed alpha
Helix 24
24
A
478 480Right-handed 310
Helix 25
25
A
511 522Right-handed alpha
Helix 26
26
A
525 529Right-handed alpha
Helix 27
27
A
534 551Right-handed alpha
Helix 28
28
A
559 565Right-handed alpha
Helix 29
29
A
575 577Right-handed 310
Helix 30
30
A
582 586Right-handed alpha
Helix 31
31
A
605 610Right-handed alpha
Helix 32
32
A
656 660Right-handed 310
Helix 33
33
A
673 678Right-handed alpha
Helix 34
34
A
735 738Right-handed 310
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There are 9 sheets in PDB entry 1DMS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 12first strand
Strand 2
A
15 22anti-parallel
Strand 3
A
25 31anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
A
81 83anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 143first strand
Strand 2
A
396 398parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 355first strand
Strand 2
A
316 320parallel
Strand 3
A
180 184parallel
Strand 4
A
216 220parallel
Strand 5
A
234 236parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 415first strand
Strand 2
A
418 421anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 431first strand
Strand 2
A
454 459parallel
Strand 3
A
471 474parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
483 487first strand
Strand 2
A
494 498anti-parallel
Strand 3
A
567 569anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
638 640first strand
Strand 2
A
710 712parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
668 671first strand
Strand 2
A
695 702parallel
Strand 3
A
686 690anti-parallel
Strand 4
A
760 763anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il