Analysis of interatomic Contacts of Structural Units in PDB entry:
1DNC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DNC entry

There are 2 chains in PDB entry 1DNC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 18GLY 62
A
 VAL 64ARG 478
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1DNC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 42Right-handed alpha
Helix 2
2
A
56 60Right-handed alpha
Helix 3
3
A
65 81Right-handed alpha
Helix 4
4
A
83 85Right-handed 310
Helix 5
5
A
96 120Right-handed alpha
Helix 6
6
A
171 173Right-handed 310
Helix 7
7
A
177 182Right-handed alpha
Helix 8
8
A
197 208Right-handed alpha
Helix 9
9
A
228 240Right-handed alpha
Helix 10
10
A
300 303Right-handed 310
Helix 11
11
A
331 333Right-handed 310
Helix 12
12
A
339 354Right-handed alpha
Helix 13
13
A
384 391Right-handed alpha
Helix 14
14
A
393 395Right-handed 310
Helix 15
15
A
406 410Right-handed 310
Helix 16
16
A
440 452Right-handed alpha
Helix 17
17
A
457 461Right-handed alpha
Helix 18
18
A
471 475Right-handed 310
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There are 6 sheets in PDB entry 1DNC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 21first strand
Strand 2
A
145 149parallel
Strand 3
A
139 142anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 328first strand
Strand 2
A
151 154parallel
Strand 3
A
23 26parallel
Strand 4
A
46 50parallel
Strand 5
A
124 127parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 160first strand
Strand 2
A
291 293anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 287first strand
Strand 2
A
189 193parallel
Strand 3
A
212 216parallel
Strand 4
A
244 246parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 279first strand
Strand 2
A
260 267anti-parallel
Strand 3
A
249 257anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 371first strand
Strand 2
A
377 381anti-parallel
Strand 3
A
429 436anti-parallel
Strand 4
A
417 424anti-parallel
Strand 5
A
396 403anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il