Analysis of interatomic Contacts of Structural Units in PDB entry:
1DNP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DNP entry

There are 2 chains in PDB entry 1DNP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1LYS 469
B
 THR 1LYS 469
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 1DNP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 22Right-handed alpha
Helix 2
2
A
38 43Right-handed alpha
Helix 3
3
A
48 67Right-handed alpha
Helix 4
4
A
80 94Right-handed alpha
Helix 5
5
A
107 119Right-handed alpha
Helix 6
6
A
150 162Right-handed alpha
Helix 7
7
A
204 216Right-handed alpha
Helix 8
8
A
218 225Right-handed alpha
Helix 9
9
A
238 243Right-handed alpha
Helix 10
10
A
248 258Right-handed alpha
Helix 11
11
A
260 264Right-handed 310
Helix 12
12
A
269 287Right-handed alpha
Helix 13
13
A
289 292Right-handed 310
Helix 14
14
A
299 303Right-handed 310
Helix 15
15
A
310 318Right-handed alpha
Helix 16
16
A
324 336Right-handed alpha
Helix 17
17
A
341 353Right-handed alpha
Helix 18
18
A
359 367Right-handed alpha
Helix 19
19
A
375 385Right-handed alpha
Helix 20
20
A
401 408Right-handed alpha
Helix 21
21
A
413 418Right-handed alpha
Helix 22
22
A
420 422Right-handed 310
Helix 23
23
A
429 440Right-handed 310
Helix 24
24
A
453 467Right-handed alpha
Helix 25
25
B
17 22Right-handed alpha
Helix 26
26
B
38 43Right-handed alpha
Helix 27
27
B
48 67Right-handed alpha
Helix 28
28
B
80 94Right-handed alpha
Helix 29
29
B
107 119Right-handed alpha
Helix 30
30
B
150 163Right-handed alpha
Helix 31
31
B
204 216Right-handed alpha
Helix 32
32
B
218 225Right-handed alpha
Helix 33
33
B
238 243Right-handed alpha
Helix 34
34
B
248 258Right-handed alpha
Helix 35
35
B
260 264Right-handed 310
Helix 36
36
B
269 287Right-handed alpha
Helix 37
37
B
289 293Right-handed 310
Helix 38
38
B
299 303Right-handed 310
Helix 39
39
B
310 318Right-handed alpha
Helix 40
40
B
324 336Right-handed alpha
Helix 41
41
B
341 353Right-handed alpha
Helix 42
42
B
359 369Right-handed alpha
Helix 43
43
B
375 385Right-handed alpha
Helix 44
44
B
401 408Right-handed alpha
Helix 45
45
B
413 418Right-handed alpha
Helix 46
46
B
420 422Right-handed 310
Helix 47
47
B
430 440Right-handed 310
Helix 48
48
B
453 467Right-handed alpha
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There are 2 sheets in PDB entry 1DNP. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 128first strand
Strand 2
A
98 102parallel
Strand 3
A
2 7parallel
Strand 4
A
29 37parallel
Strand 5
A
71 77parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 128first strand
Strand 2
B
98 102parallel
Strand 3
B
2 7parallel
Strand 4
B
29 37parallel
Strand 5
B
71 77parallel
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