Analysis of interatomic Contacts of Structural Units in PDB entry:
1DO0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DO0 entry

There are 6 chains in PDB entry 1DO0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LEU 443
B
 SER 2LEU 443
C
 SER 2LEU 443
D
 SER 2LEU 443
E
 SER 2LEU 443
F
 SER 2LEU 443
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are142 helices in PDB entry 1DO0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 14Right-handed alpha
Helix 2
2
A
20 38Right-handed alpha
Helix 3
3
A
41 46Right-handed alpha
Helix 4
4
A
62 75Right-handed alpha
Helix 5
5
A
84 87Right-handed 310
Helix 6
6
A
97 119Right-handed alpha
Helix 7
7
A
119 130Right-handed alpha
Helix 8
8
A
131 136Right-handed alpha
Helix 9
9
A
152 165Right-handed alpha
Helix 10
10
A
217 234Right-handed alpha
Helix 11
11
A
235 251Right-handed alpha
Helix 12
12
A
268 287Right-handed alpha
Helix 13
13
A
300 302Right-handed 310
Helix 14
14
A
314 318Right-handed 310
Helix 15
15
A
319 325Right-handed alpha
Helix 16
16
A
336 346Right-handed alpha
Helix 17
17
A
350 361Right-handed alpha
Helix 18
18
A
369 387Right-handed alpha
Helix 19
19
A
392 410Right-handed alpha
Helix 20
20
A
411 414Right-handed 310
Helix 21
21
A
421 435Right-handed alpha
Helix 22
22
A
435 440Right-handed alpha
Helix 23
23
B
5 17Right-handed alpha
Helix 24
24
B
20 39Right-handed alpha
Helix 25
25
B
41 46Right-handed alpha
Helix 26
26
B
62 73Right-handed alpha
Helix 27
27
B
84 87Right-handed 310
Helix 28
28
B
97 119Right-handed alpha
Helix 29
29
B
119 130Right-handed alpha
Helix 30
30
B
131 136Right-handed alpha
Helix 31
31
B
152 166Right-handed alpha
Helix 32
32
B
217 234Right-handed alpha
Helix 33
33
B
235 251Right-handed alpha
Helix 34
34
B
257 262Right-handed 310
Helix 35
35
B
270 287Right-handed alpha
Helix 36
36
B
314 318Right-handed 310
Helix 37
37
B
319 325Right-handed alpha
Helix 38
38
B
336 346Right-handed alpha
Helix 39
39
B
350 362Right-handed alpha
Helix 40
40
B
369 387Right-handed alpha
Helix 41
41
B
392 403Right-handed alpha
Helix 42
42
B
403 410Right-handed alpha
Helix 43
43
B
411 414Right-handed 310
Helix 44
44
B
421 430Right-handed alpha
Helix 45
45
B
429 435Right-handed alpha
Helix 46
46
B
435 442Right-handed alpha
Helix 47
47
C
5 15Right-handed alpha
Helix 48
48
C
20 38Right-handed alpha
Helix 49
49
C
41 48Right-handed alpha
Helix 50
50
C
62 74Right-handed alpha
Helix 51
51
C
84 91Right-handed 310
Helix 52
52
C
96 130Right-handed alpha
Helix 53
53
C
131 136Right-handed alpha
Helix 54
54
C
152 165Right-handed alpha
Helix 55
55
C
217 234Right-handed alpha
Helix 56
56
C
236 238Right-handed 310
Helix 57
57
C
239 251Right-handed alpha
Helix 58
58
C
257 262Right-handed 310
Helix 59
59
C
271 279Right-handed alpha
Helix 60
60
C
281 286Right-handed alpha
Helix 61
61
C
314 318Right-handed 310
Helix 62
62
C
319 326Right-handed alpha
Helix 63
63
C
336 345Right-handed alpha
Helix 64
64
C
350 361Right-handed alpha
Helix 65
65
C
369 387Right-handed alpha
Helix 66
66
C
391 393Right-handed 310
Helix 67
67
C
394 403Right-handed alpha
Helix 68
68
C
403 410Right-handed alpha
Helix 69
69
C
411 414Right-handed 310
Helix 70
70
C
421 430Right-handed alpha
Helix 71
71
C
429 435Right-handed alpha
Helix 72
72
C
435 443Right-handed alpha
Helix 73
73
D
5 14Right-handed alpha
Helix 74
74
D
20 38Right-handed alpha
Helix 75
75
D
41 46Right-handed alpha
Helix 76
76
D
62 75Right-handed alpha
Helix 77
77
D
84 87Right-handed 310
Helix 78
78
D
97 119Right-handed alpha
Helix 79
79
D
119 129Right-handed alpha
Helix 80
80
D
131 136Right-handed alpha
Helix 81
81
D
152 165Right-handed alpha
Helix 82
82
D
217 234Right-handed alpha
Helix 83
83
D
235 248Right-handed alpha
Helix 84
84
D
268 287Right-handed alpha
Helix 85
85
D
300 302Right-handed 310
Helix 86
86
D
314 318Right-handed 310
Helix 87
87
D
319 325Right-handed alpha
Helix 88
88
D
336 346Right-handed alpha
Helix 89
89
D
350 361Right-handed alpha
Helix 90
90
D
369 387Right-handed alpha
Helix 91
91
D
392 410Right-handed alpha
Helix 92
92
D
411 414Right-handed 310
Helix 93
93
D
421 435Right-handed alpha
Helix 94
94
D
435 440Right-handed alpha
Helix 95
95
E
5 17Right-handed alpha
Helix 96
96
E
20 40Right-handed alpha
Helix 97
97
E
41 46Right-handed alpha
Helix 98
98
E
62 74Right-handed alpha
Helix 99
99
E
84 87Right-handed 310
Helix 100
100
E
97 119Right-handed alpha
Helix 101
101
E
119 129Right-handed alpha
Helix 102
102
E
131 136Right-handed alpha
Helix 103
103
E
152 165Right-handed alpha
Helix 104
104
E
217 234Right-handed alpha
Helix 105
105
E
235 251Right-handed alpha
Helix 106
106
E
257 262Right-handed 310
Helix 107
107
E
270 287Right-handed alpha
Helix 108
108
E
314 318Right-handed 310
Helix 109
109
E
319 326Right-handed alpha
Helix 110
110
E
336 346Right-handed alpha
Helix 111
111
E
350 362Right-handed alpha
Helix 112
112
E
369 387Right-handed alpha
Helix 113
113
E
392 403Right-handed alpha
Helix 114
114
E
403 410Right-handed alpha
Helix 115
115
E
411 414Right-handed 310
Helix 116
116
E
421 435Right-handed alpha
Helix 117
117
E
435 442Right-handed alpha
Helix 118
118
F
5 15Right-handed alpha
Helix 119
119
F
20 38Right-handed alpha
Helix 120
120
F
41 48Right-handed alpha
Helix 121
121
F
62 74Right-handed alpha
Helix 122
122
F
84 91Right-handed 310
Helix 123
123
F
96 117Right-handed alpha
Helix 124
124
F
119 136Right-handed alpha
Helix 125
125
F
152 165Right-handed alpha
Helix 126
126
F
217 234Right-handed alpha
Helix 127
127
F
236 238Right-handed 310
Helix 128
128
F
239 251Right-handed alpha
Helix 129
129
F
257 262Right-handed 310
Helix 130
130
F
271 286Right-handed alpha
Helix 131
131
F
314 318Right-handed 310
Helix 132
132
F
319 326Right-handed alpha
Helix 133
133
F
336 346Right-handed alpha
Helix 134
134
F
350 361Right-handed alpha
Helix 135
135
F
369 387Right-handed alpha
Helix 136
136
F
391 393Right-handed 310
Helix 137
137
F
394 403Right-handed alpha
Helix 138
138
F
403 410Right-handed alpha
Helix 139
139
F
411 414Right-handed 310
Helix 140
140
F
421 430Right-handed alpha
Helix 141
141
F
429 435Right-handed alpha
Helix 142
142
F
435 443Right-handed alpha
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There are 24 sheets in PDB entry 1DO0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 82first strand
Strand 2
A
252 256parallel
Strand 3
A
303 308parallel
Strand 4
A
53 56parallel
Strand 5
A
328 331parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 173first strand
Strand 2
A
214 216anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 292first strand
Strand 2
A
295 298anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 368first strand
Strand 2
A
417 420parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 82first strand
Strand 2
B
252 256parallel
Strand 3
B
303 308parallel
Strand 4
B
53 56parallel
Strand 5
B
328 331parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 173first strand
Strand 2
B
214 216anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
289 292first strand
Strand 2
B
295 298anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
365 368first strand
Strand 2
B
417 420parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
78 82first strand
Strand 2
C
252 256parallel
Strand 3
C
303 308parallel
Strand 4
C
53 56parallel
Strand 5
C
328 331parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
171 173first strand
Strand 2
C
214 216anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
291 292first strand
Strand 2
C
295 296anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
365 368first strand
Strand 2
C
417 420parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
78 82first strand
Strand 2
D
252 256parallel
Strand 3
D
303 308parallel
Strand 4
D
53 56parallel
Strand 5
D
328 331parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
171 173first strand
Strand 2
D
214 216anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
289 292first strand
Strand 2
D
295 298anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
365 368first strand
Strand 2
D
417 420parallel
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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
78 82first strand
Strand 2
E
252 256parallel
Strand 3
E
303 308parallel
Strand 4
E
53 56parallel
Strand 5
E
328 331parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
171 173first strand
Strand 2
E
214 216anti-parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
289 292first strand
Strand 2
E
295 298anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
365 368first strand
Strand 2
E
417 420parallel
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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
78 82first strand
Strand 2
F
252 256parallel
Strand 3
F
303 308parallel
Strand 4
F
53 56parallel
Strand 5
F
328 331parallel
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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
171 173first strand
Strand 2
F
214 216anti-parallel
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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
291 292first strand
Strand 2
F
295 296anti-parallel
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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
367 368first strand
Strand 2
F
419 420parallel
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