Analysis of interatomic Contacts of Structural Units in PDB entry:
1DO2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DO2 entry

There are 4 chains in PDB entry 1DO2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LEU 443
B
 SER 2LEU 443
C
 SER 2LEU 443
D
 SER 2LEU 443
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 85 helices in PDB entry 1DO2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 14Right-handed alpha
Helix 2
2
A
20 40Right-handed alpha
Helix 3
3
A
41 48Right-handed 310
Helix 4
4
A
63 75Right-handed alpha
Helix 5
5
A
97 119Right-handed alpha
Helix 6
6
A
120 136Right-handed alpha
Helix 7
7
A
146 150Right-handed 310
Helix 8
8
A
151 153Right-handed 310
Helix 9
9
A
154 164Right-handed alpha
Helix 10
10
A
217 229Right-handed alpha
Helix 11
11
A
235 249Right-handed alpha
Helix 12
12
A
270 287Right-handed alpha
Helix 13
13
A
319 326Right-handed alpha
Helix 14
14
A
336 344Right-handed alpha
Helix 15
15
A
350 361Right-handed alpha
Helix 16
16
A
369 385Right-handed alpha
Helix 17
17
A
392 403Right-handed alpha
Helix 18
18
A
403 409Right-handed alpha
Helix 19
19
A
421 435Right-handed alpha
Helix 20
20
A
437 443Right-handed alpha
Helix 21
21
B
5 16Right-handed alpha
Helix 22
22
B
20 38Right-handed alpha
Helix 23
23
B
41 46Right-handed alpha
Helix 24
24
B
62 74Right-handed alpha
Helix 25
25
B
84 87Right-handed 310
Helix 26
26
B
92 97Right-handed alpha
Helix 27
27
B
97 109Right-handed alpha
Helix 28
28
B
109 119Right-handed alpha
Helix 29
29
B
121 131Right-handed alpha
Helix 30
30
B
217 230Right-handed alpha
Helix 31
31
B
235 249Right-handed alpha
Helix 32
32
B
257 262Right-handed alpha
Helix 33
33
B
273 287Right-handed alpha
Helix 34
34
B
319 324Right-handed alpha
Helix 35
35
B
336 344Right-handed alpha
Helix 36
36
B
350 362Right-handed alpha
Helix 37
37
B
369 387Right-handed alpha
Helix 38
38
B
392 403Right-handed alpha
Helix 39
39
B
403 409Right-handed alpha
Helix 40
40
B
421 429Right-handed alpha
Helix 41
41
B
430 435Right-handed alpha
Helix 42
42
B
435 443Right-handed alpha
Helix 43
43
C
5 14Right-handed alpha
Helix 44
44
C
20 40Right-handed alpha
Helix 45
45
C
41 48Right-handed 310
Helix 46
46
C
63 75Right-handed alpha
Helix 47
47
C
97 119Right-handed alpha
Helix 48
48
C
120 136Right-handed alpha
Helix 49
49
C
146 150Right-handed 310
Helix 50
50
C
151 153Right-handed 310
Helix 51
51
C
154 164Right-handed alpha
Helix 52
52
C
217 229Right-handed alpha
Helix 53
53
C
235 249Right-handed alpha
Helix 54
54
C
270 287Right-handed alpha
Helix 55
55
C
314 318Right-handed 310
Helix 56
56
C
319 326Right-handed alpha
Helix 57
57
C
336 344Right-handed alpha
Helix 58
58
C
350 362Right-handed alpha
Helix 59
59
C
369 385Right-handed alpha
Helix 60
60
C
392 403Right-handed alpha
Helix 61
61
C
403 409Right-handed alpha
Helix 62
62
C
421 435Right-handed alpha
Helix 63
63
C
437 443Right-handed alpha
Helix 64
64
D
5 16Right-handed alpha
Helix 65
65
D
20 38Right-handed alpha
Helix 66
66
D
41 46Right-handed alpha
Helix 67
67
D
62 74Right-handed alpha
Helix 68
68
D
84 87Right-handed 310
Helix 69
69
D
92 97Right-handed alpha
Helix 70
70
D
97 119Right-handed alpha
Helix 71
71
D
123 129Right-handed alpha
Helix 72
72
D
217 230Right-handed alpha
Helix 73
73
D
235 244Right-handed alpha
Helix 74
74
D
244 249Right-handed alpha
Helix 75
75
D
257 262Right-handed alpha
Helix 76
76
D
273 286Right-handed alpha
Helix 77
77
D
319 324Right-handed alpha
Helix 78
78
D
336 344Right-handed alpha
Helix 79
79
D
350 362Right-handed alpha
Helix 80
80
D
369 387Right-handed alpha
Helix 81
81
D
392 403Right-handed alpha
Helix 82
82
D
403 409Right-handed alpha
Helix 83
83
D
421 429Right-handed alpha
Helix 84
84
D
429 435Right-handed alpha
Helix 85
85
D
435 443Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 1DO2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 82first strand
Strand 2
A
252 256parallel
Strand 3
A
303 307parallel
Strand 4
A
53 56parallel
Strand 5
A
328 331parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 173first strand
Strand 2
A
214 215anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 292first strand
Strand 2
A
295 298anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 368first strand
Strand 2
A
417 420parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 82first strand
Strand 2
B
252 256parallel
Strand 3
B
303 306parallel
Strand 4
B
53 56parallel
Strand 5
B
329 331parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
289 291first strand
Strand 2
B
296 298anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
365 368first strand
Strand 2
B
417 420parallel
Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
78 82first strand
Strand 2
C
252 256parallel
Strand 3
C
303 307parallel
Strand 4
C
53 56parallel
Strand 5
C
328 331parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
289 292first strand
Strand 2
C
295 298anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
365 368first strand
Strand 2
C
417 420parallel
Back to list of sheets
Back to top of page

There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
78 82first strand
Strand 2
D
252 256parallel
Strand 3
D
303 306parallel
Strand 4
D
53 56parallel
Strand 5
D
329 331parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
365 368first strand
Strand 2
D
417 420parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il