Analysis of interatomic Contacts of Structural Units in PDB entry:
1DOB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DOB entry

There is 1 chain in PDB entry 1DOB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 394
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1DOB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
H1
A
12 23Right-handed alpha
Helix 2
H2
A
36 41Right-handed alpha
Helix 3
H3
A
50 58Right-handed alpha
Helix 4
H4
A
63 68Right-handed alpha
Helix 5
H5
A
88 91Right-handed alpha
Helix 6
H6
A
102 116Right-handed alpha
Helix 7
H7
A
164 167Right-handed alpha
Helix 8
H8
A
236 246Right-handed alpha
Helix 9
H9
A
249 252Right-handed alpha
Helix 10
H10
A
298 318Right-handed alpha
Helix 11
H11
A
322 327Right-handed 310
Helix 12
H12
A
328 350Right-handed alpha
Helix 13
H13
A
358 371Right-handed alpha
Helix 14
H14
A
375 386Right-handed alpha
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There are 5 sheets in PDB entry 1DOB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 122first strand
Strand 2
A
28 32parallel
Strand 3
A
5 8parallel
Strand 4
A
154 157parallel
Strand 5
A
281 283parallel
Strand 6
A
277 278anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 87first strand
Strand 2
A
74 79anti-parallel
Strand 3
A
200 202parallel
Strand 4
A
209 215anti-parallel
Strand 5
A
218 226anti-parallel
Strand 6
A
184 190anti-parallel
Strand 7
A
260 266anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 130first strand
Strand 2
A
138 143anti-parallel
Strand 3
A
146 151anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 181first strand
Strand 2
A
268 274anti-parallel
Strand 3
A
289 290anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 49first strand
Strand 2
A
97 99anti-parallel
Strand 3
A
70 72anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il