Analysis of interatomic Contacts of Structural Units in PDB entry:
1DOF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DOF entry

There are 4 chains in PDB entry 1DOF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 2CYS 403
B
 HIS 2CYS 403
C
 HIS 2CYS 403
D
 HIS 2CYS 403
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 65 helices in PDB entry 1DOF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 8Right-handed 310
Helix 2
2
A
12 17Right-handed alpha
Helix 3
3
A
20 42Right-handed alpha
Helix 4
4
A
48 56Right-handed alpha
Helix 5
5
A
72 86Right-handed alpha
Helix 6
6
A
95 133Right-handed alpha
Helix 7
7
A
152 177Right-handed alpha
Helix 8
9
A
194 206Right-handed alpha
Helix 9
10
A
219 248Right-handed alpha
Helix 10
11
A
271 294Right-handed alpha
Helix 11
12
A
302 304Right-handed 310
Helix 12
13
A
305 334Right-handed alpha
Helix 13
14
A
337 353Right-handed alpha
Helix 14
15
A
353 364Right-handed alpha
Helix 15
17
A
383 388Right-handed 310
Helix 16
18
A
389 399Right-handed alpha
Helix 17
19
B
4 8Right-handed 310
Helix 18
20
B
12 17Right-handed alpha
Helix 19
21
B
20 42Right-handed alpha
Helix 20
22
B
48 56Right-handed alpha
Helix 21
23
B
72 86Right-handed alpha
Helix 22
24
B
95 133Right-handed alpha
Helix 23
25
B
152 177Right-handed alpha
Helix 24
27
B
194 206Right-handed alpha
Helix 25
28
B
219 248Right-handed alpha
Helix 26
29
B
271 294Right-handed alpha
Helix 27
30
B
302 304Right-handed 310
Helix 28
31
B
305 334Right-handed alpha
Helix 29
32
B
337 349Right-handed alpha
Helix 30
33
B
350 352Right-handed 310
Helix 31
34
B
353 364Right-handed alpha
Helix 32
36
B
383 388Right-handed 310
Helix 33
37
B
389 400Right-handed alpha
Helix 34
38
C
4 8Right-handed 310
Helix 35
39
C
12 17Right-handed alpha
Helix 36
40
C
20 42Right-handed alpha
Helix 37
41
C
48 56Right-handed alpha
Helix 38
42
C
72 86Right-handed alpha
Helix 39
43
C
95 133Right-handed alpha
Helix 40
44
C
152 177Right-handed alpha
Helix 41
46
C
194 207Right-handed alpha
Helix 42
47
C
219 248Right-handed alpha
Helix 43
48
C
271 294Right-handed alpha
Helix 44
49
C
302 304Right-handed 310
Helix 45
50
C
305 334Right-handed alpha
Helix 46
51
C
337 353Right-handed alpha
Helix 47
52
C
353 364Right-handed alpha
Helix 48
54
C
383 388Right-handed 310
Helix 49
55
C
389 400Right-handed alpha
Helix 50
56
D
12 17Right-handed alpha
Helix 51
57
D
20 42Right-handed alpha
Helix 52
58
D
48 56Right-handed alpha
Helix 53
59
D
72 86Right-handed alpha
Helix 54
60
D
95 133Right-handed alpha
Helix 55
61
D
152 177Right-handed alpha
Helix 56
63
D
194 206Right-handed alpha
Helix 57
64
D
219 248Right-handed alpha
Helix 58
65
D
271 294Right-handed alpha
Helix 59
66
D
302 304Right-handed 310
Helix 60
67
D
305 334Right-handed alpha
Helix 61
68
D
337 349Right-handed alpha
Helix 62
69
D
350 352Right-handed 310
Helix 63
70
D
353 364Right-handed alpha
Helix 64
72
D
383 388Right-handed 310
Helix 65
73
D
389 399Right-handed alpha
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There are 8 sheets in PDB entry 1DOF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 142first strand
Strand 2
A
145 151anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 256first strand
Strand 2
A
335 336anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 142first strand
Strand 2
B
145 151anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 256first strand
Strand 2
B
335 336anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
137 142first strand
Strand 2
C
145 151anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
255 256first strand
Strand 2
C
335 336anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
137 142first strand
Strand 2
D
145 151anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
255 256first strand
Strand 2
D
335 336anti-parallel
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