Analysis of interatomic Contacts of Structural Units in PDB entry:
1DOG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DOG entry

There is 1 chain in PDB entry 1DOG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ALA 471
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 1DOG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
H1
A
1 20Right-handed alpha
Helix 2
H2
A
53 68Right-handed alpha
Helix 3
H3
A
72 89Right-handed alpha
Helix 4
H4
A
126 144Right-handed alpha
Helix 5
H5
A
148 168Right-handed alpha
Helix 6
H6
A
186 205Right-handed alpha
Helix 7
H7
A
211 227Right-handed alpha
Helix 8
H8
A
245 254Right-handed alpha
Helix 9
H9
A
272 285Right-handed alpha
Helix 10
H10
A
318 338Right-handed alpha
Helix 11
H11
A
345 354Right-handed alpha
Helix 12
H12
A
368 391Right-handed alpha
Helix 13
H13
A
416 429Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 1DOG. Click on sheet of interest to get list of strands forming it: S1, S2, S3, S4, S5, S6, S7, S8, S9,

There are 2 strands in S1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
35 38anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in S2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 53first strand
Strand 2
A
107 110anti-parallel
Strand 3
A
113 116anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in S3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 93first strand
Strand 2
A
96 97anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in S4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 176first strand
Strand 2
A
181 183anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in S5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 185first strand
Strand 2
A
235 237anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in S6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 264first strand
Strand 2
A
267 268anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in S7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 344first strand
Strand 2
A
360 365anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in S8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 393first strand
Strand 2
A
396 397anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in S9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 403first strand
Strand 2
A
407 415anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il