Analysis of interatomic Contacts of Structural Units in PDB entry:
1DOH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DOH entry

There are 2 chains in PDB entry 1DOH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 11MET 283
B
 TYR 13MET 283
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 31 helices in PDB entry 1DOH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 15Right-handed 310
Helix 2
2
A
20 26Right-handed 310
Helix 3
3
A
39 52Right-handed alpha
Helix 4
4
A
63 77Right-handed alpha
Helix 5
5
A
90 106Right-handed alpha
Helix 6
6
A
122 126Right-handed 310
Helix 7
7
A
127 139Right-handed alpha
Helix 8
8
A
139 152Right-handed alpha
Helix 9
9
A
164 168Right-handed 310
Helix 10
10
A
175 196Right-handed alpha
Helix 11
11
A
197 200Right-handed 310
Helix 12
12
A
213 220Right-handed alpha
Helix 13
13
A
221 224Right-handed 310
Helix 14
14
A
231 243Right-handed alpha
Helix 15
15
A
251 264Right-handed alpha
Helix 16
16
A
265 268Right-handed 310
Helix 17
17
B
21 26Right-handed 310
Helix 18
18
B
39 52Right-handed alpha
Helix 19
19
B
63 77Right-handed alpha
Helix 20
20
B
90 106Right-handed alpha
Helix 21
21
B
122 126Right-handed 310
Helix 22
22
B
127 139Right-handed alpha
Helix 23
23
B
139 153Right-handed alpha
Helix 24
24
B
164 168Right-handed 310
Helix 25
25
B
175 197Right-handed alpha
Helix 26
26
B
198 200Right-handed 310
Helix 27
27
B
213 220Right-handed alpha
Helix 28
28
B
221 224Right-handed 310
Helix 29
29
B
231 243Right-handed alpha
Helix 30
30
B
251 264Right-handed alpha
Helix 31
31
B
265 268Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 1DOH. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 85first strand
Strand 2
A
55 60parallel
Strand 3
A
31 34parallel
Strand 4
A
108 113parallel
Strand 5
A
153 162parallel
Strand 6
A
202 208parallel
Strand 7
A
274 277parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 85first strand
Strand 2
B
55 60parallel
Strand 3
B
31 34parallel
Strand 4
B
110 113parallel
Strand 5
B
158 162parallel
Strand 6
B
202 208parallel
Strand 7
B
274 277parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il