Analysis of interatomic Contacts of Structural Units in PDB entry:
1DOR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DOR entry

There are 2 chains in PDB entry 1DOR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 311
B
 MET 1LEU 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 1DOR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AH1
A
25 35Right-handed alpha
Helix 2
AH2
A
75 89Right-handed alpha
Helix 3
AH3
A
104 118Right-handed alpha
Helix 4
AHA
A
138 141Right-handed 310
Helix 5
AH4
A
142 154Right-handed alpha
Helix 6
AH5
A
170 182Right-handed alpha
Helix 7
AH6
A
221 237Right-handed alpha
Helix 8
AH7
A
253 264Right-handed alpha
Helix 9
AHB
A
271 278Right-handed alpha
Helix 10
AH8
A
280 297Right-handed alpha
Helix 11
AHC
A
300 304Right-handed 310
Helix 12
BH1
B
25 35Right-handed alpha
Helix 13
BH2
B
75 89Right-handed alpha
Helix 14
BH3
B
104 118Right-handed alpha
Helix 15
BHA
B
138 141Right-handed 310
Helix 16
BH4
B
142 154Right-handed alpha
Helix 17
BH5
B
170 182Right-handed alpha
Helix 18
BH6
B
221 237Right-handed alpha
Helix 19
BH7
B
253 264Right-handed alpha
Helix 20
BHB
B
271 278Right-handed alpha
Helix 21
BH8
B
280 297Right-handed alpha
Helix 22
BHC
B
300 304Right-handed 310
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There are 8 sheets in PDB entry 1DOR. Click on sheet of interest to get list of strands forming it: AS1, AS2, AS3, AS4, BS1, BS2, BS3, BS4,

There are 2 strands in AS1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
9 11anti-parallel
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There are 9 strands in AS2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 18first strand
Strand 2
A
39 43parallel
Strand 3
A
96 100parallel
Strand 4
A
123 128parallel
Strand 5
A
160 165parallel
Strand 6
A
187 192parallel
Strand 7
A
244 249parallel
Strand 8
A
267 270parallel
Strand 9
A
14 18parallel
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There are 4 strands in AS3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 61first strand
Strand 2
A
64 68anti-parallel
Strand 3
A
216 220anti-parallel
Strand 4
A
195 197anti-parallel
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There are 2 strands in AS4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 202first strand
Strand 2
A
207 209anti-parallel
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There are 2 strands in BS1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 6first strand
Strand 2
B
9 11anti-parallel
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There are 9 strands in BS2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 18first strand
Strand 2
B
39 43parallel
Strand 3
B
96 100parallel
Strand 4
B
123 128parallel
Strand 5
B
160 165parallel
Strand 6
B
187 192parallel
Strand 7
B
244 249parallel
Strand 8
B
267 270parallel
Strand 9
B
14 18parallel
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There are 4 strands in BS3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 61first strand
Strand 2
B
64 68anti-parallel
Strand 3
B
216 220anti-parallel
Strand 4
B
195 197anti-parallel
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There are 2 strands in BS4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 202first strand
Strand 2
B
207 209anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il