Analysis of interatomic Contacts of Structural Units in PDB entry:
1DP2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DP2 entry

There are 2 chains in PDB entry 1DP2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1THR 246
A
 ARG 248GLY 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1DP2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 21Right-handed alpha
Helix 2
2
A
42 50Right-handed alpha
Helix 3
3
A
76 87Right-handed alpha
Helix 4
4
A
107 118Right-handed alpha
Helix 5
5
A
128 136Right-handed alpha
Helix 6
6
A
157 159Right-handed 310
Helix 7
7
A
163 174Right-handed alpha
Helix 8
8
A
183 188Right-handed alpha
Helix 9
9
A
211 215Right-handed 310
Helix 10
10
A
224 235Right-handed alpha
Helix 11
11
A
252 263Right-handed alpha
Helix 12
12
A
273 282Right-handed alpha
Helix 13
13
A
283 285Right-handed 310
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There are 3 sheets in PDB entry 1DP2. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
A
123 127parallel
Strand 3
A
94 98parallel
Strand 4
A
28 32parallel
Strand 5
A
56 57parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 162first strand
Strand 2
A
269 271parallel
Strand 3
A
243 246parallel
Strand 4
A
177 180parallel
Strand 5
A
208 209parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 204first strand
Strand 2
A
287 288anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il