Analysis of interatomic Contacts of Structural Units in PDB entry:
1DPE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DPE entry

There is 1 chain in PDB entry 1DPE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1GLU 507
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 1DPE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 27Right-handed alpha
Helix 2
2
A
87 98Right-handed alpha
Helix 3
3
A
113 117Right-handed alpha
Helix 4
4
A
144 151Right-handed 310
Helix 5
5
A
160 168Right-handed alpha
Helix 6
6
A
172 177Right-handed 310
Helix 7
7
A
222 230Right-handed alpha
Helix 8
8
A
242 250Right-handed 310
Helix 9
9
A
279 287Right-handed alpha
Helix 10
10
A
291 299Right-handed alpha
Helix 11
11
A
328 337Right-handed alpha
Helix 12
12
A
361 375Right-handed alpha
Helix 13
13
A
386 395Right-handed alpha
Helix 14
14
A
412 420Right-handed 310
Helix 15
15
A
422 427Right-handed alpha
Helix 16
16
A
437 448Right-handed alpha
Helix 17
17
A
452 469Right-handed alpha
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There are 5 sheets in PDB entry 1DPE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 260first strand
Strand 2
A
479 485anti-parallel
Strand 3
A
236 237anti-parallel
Strand 4
A
2 7parallel
Strand 5
A
213 218parallel
Strand 6
A
195 200anti-parallel
Strand 7
A
185 191anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 39first strand
Strand 2
A
46 48anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 56first strand
Strand 2
A
62 67anti-parallel
Strand 3
A
134 139anti-parallel
Strand 4
A
124 129anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 382first strand
Strand 2
A
344 349parallel
Strand 3
A
400 406parallel
Strand 4
A
263 269anti-parallel
Strand 5
A
472 478anti-parallel
Strand 6
A
303 305anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
488 489first strand
Strand 2
A
505 506anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il