Analysis of interatomic Contacts of Structural Units in PDB entry:
1DPG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DPG entry

There are 2 chains in PDB entry 1DPG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1GLY 485
B
 VAL 1GLY 485
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 1DPG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
A
A
16 31Right-handed alpha
Helix 2
B
A
51 65Right-handed alpha
Helix 3
B'
A
69 76Right-handed alpha
Helix 4
C
A
91 105Right-handed alpha
Helix 5
D
A
120 132Right-handed alpha
Helix 6
E
A
154 164Right-handed alpha
Helix 7
F'
A
178 181Right-handed 310
Helix 8
F
A
183 193Right-handed alpha
Helix 9
G
A
196 199Right-handed alpha
Helix 10
H
A
224 230Right-handed alpha
Helix 11
I
A
232 249Right-handed alpha
Helix 12
J
A
258 269Right-handed alpha
Helix 13
K
A
277 283Right-handed alpha
Helix 14
L
A
405 410Right-handed alpha
Helix 15
M
A
414 424Right-handed alpha
Helix 16
N
A
433 451Right-handed alpha
Helix 17
O
A
468 475Right-handed alpha
Helix 18
A
B
16 31Right-handed alpha
Helix 19
B
B
51 65Right-handed alpha
Helix 20
B'
B
69 76Right-handed alpha
Helix 21
C
B
89 106Right-handed alpha
Helix 22
D
B
120 132Right-handed alpha
Helix 23
E
B
154 167Right-handed alpha
Helix 24
F'
B
178 181Right-handed 310
Helix 25
F
B
185 194Right-handed alpha
Helix 26
G
B
196 199Right-handed alpha
Helix 27
H
B
224 230Right-handed alpha
Helix 28
I
B
232 249Right-handed alpha
Helix 29
J
B
258 269Right-handed alpha
Helix 30
K
B
277 283Right-handed alpha
Helix 31
L
B
405 410Right-handed alpha
Helix 32
M
B
414 424Right-handed alpha
Helix 33
N
B
433 451Right-handed alpha
Helix 34
O
B
468 475Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 1DPG. Click on sheet of interest to get list of strands forming it: CEA, CEB, DMA, DMB,

There are 6 strands in CEA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 83first strand
Strand 2
A
38 45parallel
Strand 3
A
6 11parallel
Strand 4
A
111 116parallel
Strand 5
A
141 146parallel
Strand 6
A
172 175parallel
Back to list of sheets
Back to top of page

There are 6 strands in CEB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 83first strand
Strand 2
B
38 45parallel
Strand 3
B
6 11parallel
Strand 4
B
111 116parallel
Strand 5
B
141 146parallel
Strand 6
B
172 175parallel
Back to list of sheets
Back to top of page

There are 9 strands in DMA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
394 402first strand
Strand 2
A
378 386anti-parallel
Strand 3
A
368 374anti-parallel
Strand 4
A
344 351anti-parallel
Strand 5
A
209 215anti-parallel
Strand 6
A
332 337parallel
Strand 7
A
315 320anti-parallel
Strand 8
A
284 290anti-parallel
Strand 9
A
458 460parallel
Back to list of sheets
Back to top of page

There are 9 strands in DMB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
394 402first strand
Strand 2
B
378 386anti-parallel
Strand 3
B
368 374anti-parallel
Strand 4
B
344 351anti-parallel
Strand 5
B
209 215anti-parallel
Strand 6
B
332 337parallel
Strand 7
B
315 320anti-parallel
Strand 8
B
284 290anti-parallel
Strand 9
B
458 460parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il