Analysis of interatomic Contacts of Structural Units in PDB entry:
1DPM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DPM entry

There are 2 chains in PDB entry 1DPM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 35ARG 363
B
 ALA 35ARG 363
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 1DPM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
46 49Right-handed 310
Helix 2
2
A
65 68Right-handed alpha
Helix 3
3
A
70 73Right-handed 310
Helix 4
4
A
76 92Right-handed alpha
Helix 5
5
A
104 106Right-handed 310
Helix 6
6
A
110 120Right-handed alpha
Helix 7
7
A
136 139Right-handed alpha
Helix 8
8
A
143 155Right-handed alpha
Helix 9
9
A
178 194Right-handed alpha
Helix 10
10
A
204 206Right-handed 310
Helix 11
11
A
208 219Right-handed alpha
Helix 12
12
A
223 225Right-handed 310
Helix 13
13
A
231 233Right-handed 310
Helix 14
14
A
237 245Right-handed alpha
Helix 15
15
A
266 272Right-handed alpha
Helix 16
16
A
277 289Right-handed alpha
Helix 17
17
A
293 295Right-handed 310
Helix 18
18
A
313 320Right-handed alpha
Helix 19
19
A
324 338Right-handed 310
Helix 20
20
A
343 350Right-handed alpha
Helix 21
21
A
352 358Right-handed alpha
Helix 22
22
B
46 49Right-handed alpha
Helix 23
23
B
65 68Right-handed alpha
Helix 24
24
B
70 73Right-handed 310
Helix 25
25
B
76 93Right-handed alpha
Helix 26
26
B
104 106Right-handed 310
Helix 27
27
B
110 120Right-handed alpha
Helix 28
28
B
136 139Right-handed alpha
Helix 29
29
B
143 155Right-handed alpha
Helix 30
30
B
178 194Right-handed alpha
Helix 31
31
B
204 206Right-handed 310
Helix 32
32
B
208 218Right-handed alpha
Helix 33
33
B
223 225Right-handed 310
Helix 34
34
B
231 233Right-handed 310
Helix 35
35
B
237 246Right-handed alpha
Helix 36
36
B
266 272Right-handed alpha
Helix 37
37
B
277 289Right-handed alpha
Helix 38
38
B
293 295Right-handed 310
Helix 39
39
B
313 320Right-handed alpha
Helix 40
40
B
324 330Right-handed 310
Helix 41
41
B
332 338Right-handed alpha
Helix 42
42
B
343 350Right-handed alpha
Helix 43
43
B
352 358Right-handed alpha
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There are 8 sheets in PDB entry 1DPM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 39first strand
Strand 2
A
42 45anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 99first strand
Strand 2
A
123 125parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 129first strand
Strand 2
A
167 171parallel
Strand 3
A
197 201parallel
Strand 4
A
226 228parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 252first strand
Strand 2
A
296 298parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 39first strand
Strand 2
B
42 45anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 99first strand
Strand 2
B
123 125parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 129first strand
Strand 2
B
167 171parallel
Strand 3
B
198 201parallel
Strand 4
B
226 228parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
250 252first strand
Strand 2
B
296 298parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il