Analysis of interatomic Contacts of Structural Units in PDB entry:
1DT5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DT5 entry

There are 8 chains in PDB entry 1DT5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1LEU 269
B
 GLU 1LEU 269
C
 GLU 1LEU 269
D
 GLU 1LEU 269
E
 GLU 1LEU 269
F
 GLU 1LEU 269
G
 GLU 1LEU 269
H
 GLU 1LEU 269
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 96 helices in PDB entry 1DT5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 20Right-handed alpha
Helix 2
2
A
21 27Right-handed 310
Helix 3
3
A
36 40Right-handed 310
Helix 4
4
A
41 47Right-handed alpha
Helix 5
5
A
85 93Right-handed alpha
Helix 6
6
A
111 135Right-handed alpha
Helix 7
7
A
146 160Right-handed alpha
Helix 8
8
A
178 188Right-handed alpha
Helix 9
9
A
202 206Right-handed 310
Helix 10
10
A
208 212Right-handed 310
Helix 11
11
A
231 233Right-handed 310
Helix 12
12
A
255 259Right-handed 310
Helix 13
13
B
3 20Right-handed alpha
Helix 14
14
B
21 27Right-handed 310
Helix 15
15
B
36 40Right-handed 310
Helix 16
16
B
41 47Right-handed alpha
Helix 17
17
B
85 93Right-handed alpha
Helix 18
18
B
111 135Right-handed alpha
Helix 19
19
B
146 160Right-handed alpha
Helix 20
20
B
178 188Right-handed alpha
Helix 21
21
B
202 206Right-handed 310
Helix 22
22
B
208 212Right-handed 310
Helix 23
23
B
231 233Right-handed 310
Helix 24
24
B
255 259Right-handed 310
Helix 25
25
C
3 21Right-handed alpha
Helix 26
26
C
22 26Right-handed 310
Helix 27
27
C
36 40Right-handed 310
Helix 28
28
C
41 47Right-handed alpha
Helix 29
29
C
85 92Right-handed alpha
Helix 30
30
C
111 135Right-handed alpha
Helix 31
31
C
146 160Right-handed alpha
Helix 32
32
C
178 188Right-handed alpha
Helix 33
33
C
202 206Right-handed 310
Helix 34
34
C
208 212Right-handed 310
Helix 35
35
C
231 233Right-handed 310
Helix 36
36
C
255 259Right-handed 310
Helix 37
37
D
3 20Right-handed alpha
Helix 38
38
D
21 27Right-handed 310
Helix 39
39
D
36 40Right-handed 310
Helix 40
40
D
41 47Right-handed alpha
Helix 41
41
D
85 92Right-handed alpha
Helix 42
42
D
111 135Right-handed alpha
Helix 43
43
D
146 160Right-handed alpha
Helix 44
44
D
178 188Right-handed alpha
Helix 45
45
D
202 206Right-handed 310
Helix 46
46
D
208 212Right-handed 310
Helix 47
47
D
231 233Right-handed 310
Helix 48
48
D
255 259Right-handed 310
Helix 49
49
E
3 20Right-handed alpha
Helix 50
50
E
21 26Right-handed 310
Helix 51
51
E
36 40Right-handed 310
Helix 52
52
E
41 47Right-handed alpha
Helix 53
53
E
85 93Right-handed alpha
Helix 54
54
E
111 135Right-handed alpha
Helix 55
55
E
146 160Right-handed alpha
Helix 56
56
E
178 188Right-handed alpha
Helix 57
57
E
202 206Right-handed 310
Helix 58
58
E
208 212Right-handed 310
Helix 59
59
E
231 233Right-handed 310
Helix 60
60
E
255 259Right-handed 310
Helix 61
61
F
3 20Right-handed alpha
Helix 62
62
F
21 27Right-handed 310
Helix 63
63
F
36 40Right-handed 310
Helix 64
64
F
41 47Right-handed alpha
Helix 65
65
F
85 93Right-handed alpha
Helix 66
66
F
111 135Right-handed alpha
Helix 67
67
F
146 160Right-handed alpha
Helix 68
68
F
178 188Right-handed alpha
Helix 69
69
F
202 206Right-handed 310
Helix 70
70
F
208 212Right-handed 310
Helix 71
71
F
231 233Right-handed 310
Helix 72
72
F
255 259Right-handed 310
Helix 73
73
G
3 20Right-handed alpha
Helix 74
74
G
21 27Right-handed 310
Helix 75
75
G
36 40Right-handed 310
Helix 76
76
G
41 47Right-handed alpha
Helix 77
77
G
85 93Right-handed alpha
Helix 78
78
G
111 135Right-handed alpha
Helix 79
79
G
146 160Right-handed alpha
Helix 80
80
G
178 188Right-handed alpha
Helix 81
81
G
202 206Right-handed 310
Helix 82
82
G
208 212Right-handed 310
Helix 83
83
G
231 233Right-handed 310
Helix 84
84
G
255 259Right-handed 310
Helix 85
85
H
3 20Right-handed alpha
Helix 86
86
H
21 27Right-handed 310
Helix 87
87
H
36 40Right-handed 310
Helix 88
88
H
41 47Right-handed alpha
Helix 89
89
H
85 93Right-handed alpha
Helix 90
90
H
111 135Right-handed alpha
Helix 91
91
H
146 160Right-handed alpha
Helix 92
92
H
178 188Right-handed alpha
Helix 93
93
H
202 206Right-handed 310
Helix 94
94
H
208 212Right-handed 310
Helix 95
95
H
231 233Right-handed 310
Helix 96
96
H
255 259Right-handed 310
Back to top of page

There are 16 sheets in PDB entry 1DT5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 58first strand
Strand 2
A
63 70anti-parallel
Strand 3
A
75 80anti-parallel
Strand 4
A
139 145parallel
Strand 5
A
166 171parallel
Strand 6
A
193 198parallel
Strand 7
A
219 222parallel
Strand 8
A
235 238anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 99first strand
Strand 2
A
108 110anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 58first strand
Strand 2
B
63 70anti-parallel
Strand 3
B
75 80anti-parallel
Strand 4
B
139 145parallel
Strand 5
B
166 171parallel
Strand 6
B
193 198parallel
Strand 7
B
219 222parallel
Strand 8
B
235 238anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 99first strand
Strand 2
B
108 110anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
49 58first strand
Strand 2
C
63 70anti-parallel
Strand 3
C
75 80anti-parallel
Strand 4
C
139 145parallel
Strand 5
C
166 171parallel
Strand 6
C
193 198parallel
Strand 7
C
219 222parallel
Strand 8
C
235 238anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
97 99first strand
Strand 2
C
108 110anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
49 58first strand
Strand 2
D
63 70anti-parallel
Strand 3
D
75 80anti-parallel
Strand 4
D
139 145parallel
Strand 5
D
166 171parallel
Strand 6
D
193 198parallel
Strand 7
D
219 222parallel
Strand 8
D
235 238anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
97 99first strand
Strand 2
D
108 110anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
49 58first strand
Strand 2
E
63 70anti-parallel
Strand 3
E
75 80anti-parallel
Strand 4
E
139 145parallel
Strand 5
E
166 171parallel
Strand 6
E
193 198parallel
Strand 7
E
219 222parallel
Strand 8
E
235 238anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
97 99first strand
Strand 2
E
108 110anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
49 58first strand
Strand 2
F
63 70anti-parallel
Strand 3
F
75 80anti-parallel
Strand 4
F
139 145parallel
Strand 5
F
166 171parallel
Strand 6
F
193 198parallel
Strand 7
F
219 222parallel
Strand 8
F
235 238anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
97 99first strand
Strand 2
F
108 110anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
49 58first strand
Strand 2
G
63 70anti-parallel
Strand 3
G
75 80anti-parallel
Strand 4
G
139 145parallel
Strand 5
G
167 171parallel
Strand 6
G
193 198parallel
Strand 7
G
219 222parallel
Strand 8
G
235 238anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
97 99first strand
Strand 2
G
108 110anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
49 58first strand
Strand 2
H
63 70anti-parallel
Strand 3
H
75 80anti-parallel
Strand 4
H
139 145parallel
Strand 5
H
166 171parallel
Strand 6
H
193 198parallel
Strand 7
H
219 222parallel
Strand 8
H
235 238anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
97 99first strand
Strand 2
H
108 110anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il