Analysis of interatomic Contacts of Structural Units in PDB entry:
1DUV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DUV entry

There are 3 chains in PDB entry 1DUV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
G
 SER 1LYS 333
H
 SER 1LYS 333
I
 SER 1LYS 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 1DUV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
G
10 14Right-handed 310
Helix 2
2
G
15 35Right-handed alpha
Helix 3
3
G
56 69Right-handed alpha
Helix 4
4
G
88 97Right-handed alpha
Helix 5
5
G
109 121Right-handed alpha
Helix 6
6
G
133 148Right-handed alpha
Helix 7
7
G
152 155Right-handed 310
Helix 8
8
G
166 180Right-handed alpha
Helix 9
9
G
188 192Right-handed 310
Helix 10
10
G
194 208Right-handed alpha
Helix 11
11
G
217 223Right-handed alpha
Helix 12
12
G
241 251Right-handed alpha
Helix 13
13
G
252 254Right-handed 310
Helix 14
14
G
256 262Right-handed alpha
Helix 15
15
G
282 292Right-handed alpha
Helix 16
16
G
301 306Right-handed alpha
Helix 17
17
G
311 332Right-handed alpha
Helix 18
18
H
10 14Right-handed 310
Helix 19
19
H
15 35Right-handed alpha
Helix 20
20
H
56 69Right-handed alpha
Helix 21
21
H
88 97Right-handed alpha
Helix 22
22
H
109 121Right-handed alpha
Helix 23
23
H
133 148Right-handed alpha
Helix 24
24
H
152 155Right-handed 310
Helix 25
25
H
166 180Right-handed alpha
Helix 26
26
H
188 192Right-handed 310
Helix 27
27
H
194 208Right-handed alpha
Helix 28
28
H
217 223Right-handed alpha
Helix 29
29
H
241 251Right-handed alpha
Helix 30
30
H
252 254Right-handed 310
Helix 31
31
H
256 263Right-handed alpha
Helix 32
32
H
282 292Right-handed alpha
Helix 33
33
H
301 307Right-handed alpha
Helix 34
34
H
311 332Right-handed alpha
Helix 35
35
I
10 14Right-handed 310
Helix 36
36
I
15 36Right-handed alpha
Helix 37
37
I
56 69Right-handed alpha
Helix 38
38
I
88 97Right-handed alpha
Helix 39
39
I
109 121Right-handed alpha
Helix 40
40
I
133 148Right-handed alpha
Helix 41
41
I
152 155Right-handed 310
Helix 42
42
I
166 180Right-handed alpha
Helix 43
43
I
188 192Right-handed 310
Helix 44
44
I
194 208Right-handed alpha
Helix 45
45
I
217 223Right-handed alpha
Helix 46
46
I
239 241Right-handed 310
Helix 47
47
I
242 251Right-handed alpha
Helix 48
48
I
252 254Right-handed 310
Helix 49
49
I
256 263Right-handed alpha
Helix 50
50
I
282 293Right-handed alpha
Helix 51
51
I
301 306Right-handed alpha
Helix 52
52
I
311 332Right-handed alpha
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There are 6 sheets in PDB entry 1DUV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
72 76first strand
Strand 2
G
46 51parallel
Strand 3
G
102 106parallel
Strand 4
G
124 126parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
211 215first strand
Strand 2
G
182 186parallel
Strand 3
G
157 161parallel
Strand 4
G
227 230parallel
Strand 5
G
269 272parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
72 76first strand
Strand 2
H
46 51parallel
Strand 3
H
102 106parallel
Strand 4
H
124 126parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
211 215first strand
Strand 2
H
182 186parallel
Strand 3
H
157 161parallel
Strand 4
H
227 230parallel
Strand 5
H
269 272parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
72 76first strand
Strand 2
I
46 51parallel
Strand 3
I
102 106parallel
Strand 4
I
124 126parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
211 215first strand
Strand 2
I
182 186parallel
Strand 3
I
157 161parallel
Strand 4
I
227 230parallel
Strand 5
I
269 272parallel
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