Analysis of interatomic Contacts of Structural Units in PDB entry:
1DV6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DV6 entry

There are 6 chains in PDB entry 1DV6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 ALA 1GLY 281
M
 TYR 3HIS 301
H
 ASP 11LEU 256
R
 ALA 1GLY 281
S
 TYR 3HIS 301
T
 ASP 11LEU 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 84 helices in PDB entry 1DV6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
L
6 10Right-handed 310
Helix 2
2
L
32 57Right-handed alpha
Helix 3
3
L
70 74Right-handed 310
Helix 4
4
L
83 112Right-handed alpha
Helix 5
5
L
115 133Right-handed alpha
Helix 6
6
L
133 140Right-handed alpha
Helix 7
7
L
141 145Right-handed 310
Helix 8
8
L
151 163Right-handed alpha
Helix 9
9
L
164 165Right-handed 310
Helix 10
10
L
166 169Right-handed 310
Helix 11
11
L
170 199Right-handed alpha
Helix 12
12
L
208 221Right-handed alpha
Helix 13
13
L
225 250Right-handed alpha
Helix 14
14
L
258 262Right-handed 310
Helix 15
15
L
263 268Right-handed alpha
Helix 16
16
M
25 28Right-handed 310
Helix 17
17
M
36 41Right-handed alpha
Helix 18
18
M
53 78Right-handed alpha
Helix 19
19
M
81 88Right-handed alpha
Helix 20
20
M
98 102Right-handed 310
Helix 21
21
M
108 111Right-handed 310
Helix 22
22
M
112 139Right-handed alpha
Helix 23
23
M
144 162Right-handed alpha
Helix 24
24
M
162 168Right-handed alpha
Helix 25
25
M
170 174Right-handed 310
Helix 26
26
M
178 193Right-handed alpha
Helix 27
27
M
195 198Right-handed 310
Helix 28
28
M
199 226Right-handed alpha
Helix 29
29
M
227 230Right-handed 310
Helix 30
30
M
233 240Right-handed alpha
Helix 31
31
M
242 257Right-handed alpha
Helix 32
32
M
264 287Right-handed alpha
Helix 33
33
M
293 300Right-handed alpha
Helix 34
34
H
11 35Right-handed alpha
Helix 35
35
H
103 108Right-handed alpha
Helix 36
36
H
109 113Right-handed 310
Helix 37
37
H
135 137Right-handed 310
Helix 38
38
H
194 196Right-handed 310
Helix 39
39
H
209 213Right-handed 310
Helix 40
40
H
226 244Right-handed alpha
Helix 41
41
H
245 248Right-handed 310
Helix 42
42
H
250 255Right-handed alpha
Helix 43
43
R
6 10Right-handed 310
Helix 44
44
R
32 57Right-handed alpha
Helix 45
45
R
70 74Right-handed 310
Helix 46
46
R
83 112Right-handed alpha
Helix 47
47
R
115 133Right-handed alpha
Helix 48
48
R
133 140Right-handed alpha
Helix 49
49
R
141 145Right-handed 310
Helix 50
50
R
151 163Right-handed alpha
Helix 51
51
R
164 165Right-handed 310
Helix 52
52
R
166 169Right-handed 310
Helix 53
53
R
170 199Right-handed alpha
Helix 54
54
R
208 221Right-handed alpha
Helix 55
55
R
225 250Right-handed alpha
Helix 56
56
R
258 262Right-handed 310
Helix 57
57
R
263 268Right-handed alpha
Helix 58
58
S
25 28Right-handed 310
Helix 59
59
S
36 41Right-handed alpha
Helix 60
60
S
53 78Right-handed alpha
Helix 61
61
S
81 88Right-handed alpha
Helix 62
62
S
98 102Right-handed 310
Helix 63
63
S
108 111Right-handed 310
Helix 64
64
S
112 139Right-handed alpha
Helix 65
65
S
144 162Right-handed alpha
Helix 66
66
S
162 168Right-handed alpha
Helix 67
67
S
170 174Right-handed 310
Helix 68
68
S
180 193Right-handed alpha
Helix 69
69
S
195 198Right-handed 310
Helix 70
70
S
199 226Right-handed alpha
Helix 71
71
S
227 230Right-handed 310
Helix 72
72
S
233 240Right-handed alpha
Helix 73
73
S
242 257Right-handed alpha
Helix 74
74
S
264 286Right-handed alpha
Helix 75
75
S
293 300Right-handed alpha
Helix 76
76
T
11 35Right-handed alpha
Helix 77
77
T
103 108Right-handed alpha
Helix 78
78
T
109 113Right-handed 310
Helix 79
79
T
135 137Right-handed 310
Helix 80
80
T
194 196Right-handed 310
Helix 81
81
T
209 213Right-handed 310
Helix 82
82
T
226 244Right-handed alpha
Helix 83
83
T
245 248Right-handed 310
Helix 84
84
T
250 255Right-handed alpha
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There are 12 sheets in PDB entry 1DV6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
25 26first strand
Strand 2
L
29 30anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
11 13first strand
Strand 2
H
141 144anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
62 65first strand
Strand 2
H
72 75anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
87 89first strand
Strand 2
H
98 100anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
188 192first strand
Strand 2
H
175 182anti-parallel
Strand 3
H
160 170anti-parallel
Strand 4
H
131 133anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
188 192first strand
Strand 2
H
175 182anti-parallel
Strand 3
H
160 170anti-parallel
Strand 4
H
152 155anti-parallel
Strand 5
H
203 205parallel
Strand 6
H
197 198anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
25 26first strand
Strand 2
R
29 30anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
11 13first strand
Strand 2
T
141 144anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
62 65first strand
Strand 2
T
72 75anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
87 89first strand
Strand 2
T
98 100anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
188 192first strand
Strand 2
T
175 182anti-parallel
Strand 3
T
160 170anti-parallel
Strand 4
T
131 133anti-parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
188 192first strand
Strand 2
T
175 182anti-parallel
Strand 3
T
160 170anti-parallel
Strand 4
T
152 155anti-parallel
Strand 5
T
203 205parallel
Strand 6
T
197 198anti-parallel
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