Analysis of interatomic Contacts of Structural Units in PDB entry:
1DVJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DVJ entry

There are 4 chains in PDB entry 1DVJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 9ALA 247
B
 ARG 14ASP 224
C
 MET 9ALA 244
D
 MET 9ILE 222
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 1DVJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 13Right-handed 310
Helix 2
2
A
23 35Right-handed alpha
Helix 3
3
A
36 38Right-handed 310
Helix 4
4
A
45 52Right-handed alpha
Helix 5
5
A
53 63Right-handed alpha
Helix 6
6
A
76 90Right-handed alpha
Helix 7
7
A
102 117Right-handed alpha
Helix 8
8
A
128 133Right-handed 310
Helix 9
9
A
134 150Right-handed alpha
Helix 10
10
A
160 172Right-handed alpha
Helix 11
11
A
188 193Right-handed alpha
Helix 12
12
A
202 207Right-handed alpha
Helix 13
13
A
210 224Right-handed alpha
Helix 14
14
A
230 247Right-handed alpha
Helix 15
15
B
23 35Right-handed alpha
Helix 16
16
B
36 38Right-handed 310
Helix 17
17
B
45 52Right-handed alpha
Helix 18
18
B
53 64Right-handed alpha
Helix 19
19
B
76 90Right-handed alpha
Helix 20
20
B
102 117Right-handed alpha
Helix 21
21
B
128 133Right-handed 310
Helix 22
22
B
134 150Right-handed alpha
Helix 23
23
B
160 172Right-handed alpha
Helix 24
24
B
188 193Right-handed alpha
Helix 25
25
B
202 207Right-handed alpha
Helix 26
26
B
210 224Right-handed alpha
Helix 27
27
C
11 13Right-handed 310
Helix 28
28
C
23 35Right-handed alpha
Helix 29
29
C
45 52Right-handed alpha
Helix 30
30
C
53 64Right-handed alpha
Helix 31
31
C
76 90Right-handed alpha
Helix 32
32
C
102 117Right-handed alpha
Helix 33
33
C
128 133Right-handed 310
Helix 34
34
C
134 150Right-handed alpha
Helix 35
35
C
160 172Right-handed alpha
Helix 36
36
C
188 193Right-handed alpha
Helix 37
37
C
202 207Right-handed alpha
Helix 38
38
C
210 224Right-handed alpha
Helix 39
39
C
230 244Right-handed alpha
Helix 40
40
D
11 13Right-handed 310
Helix 41
41
D
23 35Right-handed alpha
Helix 42
42
D
45 52Right-handed alpha
Helix 43
43
D
53 64Right-handed alpha
Helix 44
44
D
76 90Right-handed alpha
Helix 45
45
D
102 117Right-handed alpha
Helix 46
46
D
128 133Right-handed 310
Helix 47
47
D
134 150Right-handed alpha
Helix 48
48
D
160 172Right-handed alpha
Helix 49
49
D
188 193Right-handed alpha
Helix 50
50
D
202 207Right-handed alpha
Helix 51
51
D
210 222Right-handed alpha
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There are 4 sheets in PDB entry 1DVJ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 19first strand
Strand 2
A
40 44parallel
Strand 3
A
66 73parallel
Strand 4
A
94 98parallel
Strand 5
A
119 123parallel
Strand 6
A
153 155parallel
Strand 7
A
176 179parallel
Strand 8
A
198 201parallel
Strand 9
A
15 19parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 19first strand
Strand 2
B
40 44parallel
Strand 3
B
66 73parallel
Strand 4
B
94 98parallel
Strand 5
B
119 123parallel
Strand 6
B
153 155parallel
Strand 7
B
176 179parallel
Strand 8
B
198 201parallel
Strand 9
B
15 19parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
15 19first strand
Strand 2
C
40 44parallel
Strand 3
C
66 73parallel
Strand 4
C
94 98parallel
Strand 5
C
119 123parallel
Strand 6
C
153 155parallel
Strand 7
C
176 179parallel
Strand 8
C
198 201parallel
Strand 9
C
15 19parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
15 19first strand
Strand 2
D
40 44parallel
Strand 3
D
66 73parallel
Strand 4
D
94 98parallel
Strand 5
D
119 123parallel
Strand 6
D
153 155parallel
Strand 7
D
176 179parallel
Strand 8
D
198 201parallel
Strand 9
D
15 19parallel
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