Analysis of interatomic Contacts of Structural Units in PDB entry:
1DVM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1DVM entry

There are 4 chains in PDB entry 1DVM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 4	PRO 379
B	PRO 4	PRO 379
C	PRO 5	PRO 379
D	PRO 4	PRO 379

There are 49 helices in PDB entry 1DVM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	4	28	Right-handed alpha
Helix 2	2	A	37	47	Right-handed alpha
Helix 3	3	A	48	50	Right-handed 310
Helix 4	4	A	51	63	Right-handed alpha
Helix 5	5	A	70	83	Right-handed alpha
Helix 6	6	A	108	118	Right-handed alpha
Helix 7	7	A	128	143	Right-handed alpha
Helix 8	8	A	152	157	Right-handed 310
Helix 9	9	A	229	231	Right-handed 310
Helix 10	10	A	247	252	Right-handed alpha
Helix 11	11	A	255	266	Right-handed alpha
Helix 12	12	A	286	292	Right-handed alpha
Helix 13	13	A	296	300	Right-handed 310
Helix 14	14	B	4	25	Right-handed alpha
Helix 15	15	B	35	47	Right-handed alpha
Helix 16	16	B	51	63	Right-handed alpha
Helix 17	17	B	70	83	Right-handed alpha
Helix 18	18	B	108	118	Right-handed alpha
Helix 19	19	B	128	143	Right-handed alpha
Helix 20	20	B	151	157	Right-handed 310
Helix 21	21	B	229	231	Right-handed 310
Helix 22	22	B	247	252	Right-handed alpha
Helix 23	23	B	255	265	Right-handed alpha
Helix 24	24	B	286	293	Right-handed alpha
Helix 25	25	B	296	300	Right-handed 310
Helix 26	26	C	5	25	Right-handed alpha
Helix 27	27	C	35	47	Right-handed alpha
Helix 28	28	C	51	63	Right-handed alpha
Helix 29	29	C	70	83	Right-handed alpha
Helix 30	30	C	108	118	Right-handed alpha
Helix 31	31	C	128	144	Right-handed alpha
Helix 32	32	C	151	156	Right-handed 310
Helix 33	33	C	247	252	Right-handed alpha
Helix 34	34	C	255	265	Right-handed alpha
Helix 35	35	C	286	292	Right-handed alpha
Helix 36	36	C	296	300	Right-handed 310
Helix 37	37	D	7	25	Right-handed alpha
Helix 38	38	D	35	50	Right-handed alpha
Helix 39	39	D	51	63	Right-handed alpha
Helix 40	40	D	70	83	Right-handed alpha
Helix 41	41	D	108	118	Right-handed alpha
Helix 42	42	D	128	144	Right-handed alpha
Helix 43	43	D	151	156	Right-handed 310
Helix 44	44	D	180	184	Right-handed 310
Helix 45	45	D	229	231	Right-handed 310
Helix 46	46	D	247	252	Right-handed alpha
Helix 47	47	D	255	264	Right-handed alpha
Helix 48	48	D	286	292	Right-handed alpha
Helix 49	49	D	296	300	Right-handed 310

There are 13 sheets in PDB entry 1DVM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	353	first strand
Strand 2	A	267	276	parallel
Strand 3	A	196	214	anti-parallel
Strand 4	A	185	190	anti-parallel

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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	353	first strand
Strand 2	A	267	276	parallel
Strand 3	A	196	214	anti-parallel
Strand 4	A	220	227	anti-parallel
Strand 5	A	233	240	anti-parallel
Strand 6	A	358	364	anti-parallel
Strand 7	A	369	376	anti-parallel
Strand 8	A	32	34	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	124	first strand
Strand 2	A	91	100	parallel
Strand 3	A	163	172	anti-parallel
Strand 4	A	319	328	parallel
Strand 5	A	278	284	anti-parallel
Strand 6	D	342	346	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	353	first strand
Strand 2	B	267	276	parallel
Strand 3	B	196	214	anti-parallel
Strand 4	B	185	190	anti-parallel

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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	353	first strand
Strand 2	B	267	276	parallel
Strand 3	B	196	214	anti-parallel
Strand 4	B	220	227	anti-parallel
Strand 5	B	233	240	anti-parallel
Strand 6	B	358	364	anti-parallel
Strand 7	B	370	376	anti-parallel
Strand 8	B	32	34	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	124	first strand
Strand 2	B	91	100	parallel
Strand 3	B	163	172	anti-parallel
Strand 4	B	319	328	parallel
Strand 5	B	278	285	anti-parallel

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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	34	first strand
Strand 2	C	370	376	anti-parallel
Strand 3	C	358	364	anti-parallel
Strand 4	C	233	240	anti-parallel
Strand 5	C	220	227	anti-parallel
Strand 6	C	201	214	anti-parallel
Strand 7	C	267	276	anti-parallel
Strand 8	C	351	353	parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	124	first strand
Strand 2	C	91	100	parallel
Strand 3	C	163	172	anti-parallel
Strand 4	C	319	328	parallel
Strand 5	C	278	285	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	190	first strand
Strand 2	C	196	198	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	350	353	first strand
Strand 2	D	268	276	parallel
Strand 3	D	200	214	anti-parallel
Strand 4	D	185	186	anti-parallel

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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	350	353	first strand
Strand 2	D	268	276	parallel
Strand 3	D	200	214	anti-parallel
Strand 4	D	220	227	anti-parallel
Strand 5	D	233	239	anti-parallel
Strand 6	D	358	364	anti-parallel
Strand 7	D	369	376	anti-parallel
Strand 8	D	32	34	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	124	first strand
Strand 2	D	91	100	parallel
Strand 3	D	163	171	anti-parallel
Strand 4	D	319	328	parallel
Strand 5	D	278	285	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	189	190	first strand
Strand 2	D	196	197	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1DVM

Analysis of interatomic Contacts of Structural Units in PDB entry:
1DVM