Analysis of interatomic Contacts of Structural Units in PDB entry:
1DVR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DVR entry

There are 2 chains in PDB entry 1DVR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1ASN 220
B
 SER 1ASN 220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1DVR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 28Right-handed alpha
Helix 2
2
A
35 45Right-handed alpha
Helix 3
3
A
48 59Right-handed alpha
Helix 4
4
A
66 78Right-handed alpha
Helix 5
5
A
80 83Right-handed 310
Helix 6
6
A
95 108Right-handed alpha
Helix 7
7
A
122 130Right-handed alpha
Helix 8
8
A
170 193Right-handed alpha
Helix 9
9
A
206 216Right-handed alpha
Helix 10
10
B
17 28Right-handed alpha
Helix 11
11
B
35 44Right-handed alpha
Helix 12
12
B
48 57Right-handed alpha
Helix 13
13
B
65 78Right-handed alpha
Helix 14
14
B
80 84Right-handed 310
Helix 15
15
B
95 108Right-handed alpha
Helix 16
16
B
122 131Right-handed alpha
Helix 17
17
B
170 193Right-handed alpha
Helix 18
18
B
206 217Right-handed alpha
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There are 4 sheets in PDB entry 1DVR. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 201first strand
Strand 2
A
114 119parallel
Strand 3
A
6 11parallel
Strand 4
A
86 89parallel
Strand 5
A
31 34parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 135first strand
Strand 2
A
140 143anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
197 201first strand
Strand 2
B
114 119parallel
Strand 3
B
5 11parallel
Strand 4
B
85 89parallel
Strand 5
B
31 34parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 134first strand
Strand 2
B
141 143anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il