Analysis of interatomic Contacts of Structural Units in PDB entry:
1DWU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DWU entry

There are 2 chains in PDB entry 1DWU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 213
B
 MET 1LYS 213
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1DWU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 16Right-handed alpha
Helix 2
2
A
39 43Right-handed 310
Helix 3
3
A
66 75Right-handed alpha
Helix 4
4
A
81 91Right-handed alpha
Helix 5
5
A
91 102Right-handed alpha
Helix 6
6
A
111 118Right-handed alpha
Helix 7
7
A
119 127Right-handed alpha
Helix 8
8
A
138 148Right-handed alpha
Helix 9
9
A
170 189Right-handed alpha
Helix 10
10
A
191 194Right-handed 310
Helix 11
11
B
3 17Right-handed alpha
Helix 12
12
B
39 43Right-handed 310
Helix 13
13
B
65 75Right-handed alpha
Helix 14
14
B
81 91Right-handed alpha
Helix 15
15
B
91 101Right-handed alpha
Helix 16
16
B
111 119Right-handed alpha
Helix 17
17
B
119 127Right-handed alpha
Helix 18
18
B
138 147Right-handed alpha
Helix 19
19
B
170 187Right-handed alpha
Helix 20
20
B
191 194Right-handed 310
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There are 6 sheets in PDB entry 1DWU. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 166first strand
Strand 2
A
25 32anti-parallel
Strand 3
A
196 202anti-parallel
Strand 4
A
209 210anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 49first strand
Strand 2
A
149 153anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 80first strand
Strand 2
A
60 63parallel
Strand 3
A
104 108parallel
Strand 4
A
131 133parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 166first strand
Strand 2
B
25 32anti-parallel
Strand 3
B
196 203anti-parallel
Strand 4
B
208 211anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 49first strand
Strand 2
B
149 153anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 80first strand
Strand 2
B
60 63parallel
Strand 3
B
104 108parallel
Strand 4
B
131 133parallel
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