Analysis of interatomic Contacts of Structural Units in PDB entry:
1DWW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DWW entry

There are 2 chains in PDB entry 1DWW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 77GLN 496
B
 GLN 77GLN 496
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 1DWW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
93 98Right-handed 310
Helix 2
2
A
116 119Right-handed 310
Helix 3
3
A
129 146Right-handed alpha
Helix 4
4
A
152 171Right-handed alpha
Helix 5
5
A
176 190Right-handed alpha
Helix 6
6
A
196 200Right-handed 310
Helix 7
7
A
213 230Right-handed alpha
Helix 8
8
A
231 233Right-handed 310
Helix 9
9
A
277 287Right-handed alpha
Helix 10
10
A
332 337Right-handed 310
Helix 11
11
A
368 374Right-handed alpha
Helix 12
12
A
385 392Right-handed alpha
Helix 13
13
A
399 402Right-handed 310
Helix 14
14
A
403 423Right-handed alpha
Helix 15
15
A
429 449Right-handed alpha
Helix 16
16
A
454 459Right-handed alpha
Helix 17
17
A
467 471Right-handed 310
Helix 18
18
A
488 493Right-handed alpha
Helix 19
19
B
93 98Right-handed 310
Helix 20
20
B
116 119Right-handed 310
Helix 21
21
B
129 146Right-handed alpha
Helix 22
22
B
152 171Right-handed alpha
Helix 23
23
B
176 190Right-handed alpha
Helix 24
24
B
196 200Right-handed 310
Helix 25
25
B
213 230Right-handed alpha
Helix 26
26
B
231 233Right-handed 310
Helix 27
27
B
277 287Right-handed alpha
Helix 28
28
B
316 320Right-handed 310
Helix 29
29
B
330 337Right-handed 310
Helix 30
30
B
368 374Right-handed alpha
Helix 31
31
B
374 379Right-handed alpha
Helix 32
32
B
385 393Right-handed alpha
Helix 33
33
B
399 402Right-handed 310
Helix 34
34
B
403 423Right-handed alpha
Helix 35
35
B
429 449Right-handed alpha
Helix 36
36
B
454 459Right-handed alpha
Helix 37
37
B
467 471Right-handed 310
Helix 38
38
B
488 492Right-handed 310
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There are 12 sheets in PDB entry 1DWW. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE, BF,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 82first strand
Strand 2
A
89 92anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 207first strand
Strand 2
A
237 240parallel
Strand 3
A
363 364anti-parallel
Strand 4
A
345 346anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 253first strand
Strand 2
A
301 304anti-parallel
Strand 3
A
311 313anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 264first strand
Strand 2
A
272 273anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 324first strand
Strand 2
A
339 341anti-parallel
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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 358first strand
Strand 2
A
350 353anti-parallel
Strand 3
A
482 484anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 82first strand
Strand 2
B
89 92anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 207first strand
Strand 2
B
237 240parallel
Strand 3
B
363 364anti-parallel
Strand 4
B
345 346anti-parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
252 253first strand
Strand 2
B
301 304anti-parallel
Strand 3
B
311 313anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
263 264first strand
Strand 2
B
272 273anti-parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
322 324first strand
Strand 2
B
339 341anti-parallel
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There are 3 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
356 358first strand
Strand 2
B
350 353anti-parallel
Strand 3
B
482 484anti-parallel
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