Analysis of interatomic Contacts of Structural Units in PDB entry:
1DX5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DX5 entry

There are 12 chains in PDB entry 1DX5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
THR 1ARG 15
B
THR 1ARG 15
C
THR 1ARG 15
D
THR 1ARG 15
I
VAL 345CYS 462
J
VAL 345CYS 462
K
VAL 345CYS 462
L
VAL 345CYS 462
M
ILE 16GLU 247
N
ILE 16GLU 247
O
ILE 16GLU 247
P
ILE 16GLU 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 1DX5. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
7 11Right-handed 310
Helix 2
AA2
A
14 14Right-handed alpha
Helix 3
AA3
B
7 11Right-handed 310
Helix 4
AA4
B
14 14Right-handed alpha
Helix 5
AA5
C
7 11Right-handed 310
Helix 6
AA6
C
14 14Right-handed alpha
Helix 7
AA7
D
7 11Right-handed 310
Helix 8
AA8
D
14 14Right-handed alpha
Helix 9
AA9
I
349 354Right-handed 310
Helix 10
AB1
I
425 430Right-handed alpha
Helix 11
AB2
J
349 354Right-handed 310
Helix 12
AB3
J
425 430Right-handed alpha
Helix 13
AB4
K
349 354Right-handed 310
Helix 14
AB5
K
425 430Right-handed alpha
Helix 15
AB6
L
349 354Right-handed 310
Helix 16
AB7
L
425 430Right-handed alpha
Helix 17
AB8
M
55 58Right-handed 310
Helix 18
AB9
M
60 60Right-handed 310
Helix 19
AC1
M
60 62Right-handed 310
Helix 20
AC2
M
125 130Right-handed alpha
Helix 21
AC3
M
164 171Right-handed alpha
Helix 22
AC4
M
185 186Right-handed 310
Helix 23
AC5
M
234 245Right-handed alpha
Helix 24
AC6
N
55 58Right-handed 310
Helix 25
AC7
N
60 60Right-handed 310
Helix 26
AC8
N
60 62Right-handed 310
Helix 27
AC9
N
125 130Right-handed alpha
Helix 28
AD1
N
164 171Right-handed alpha
Helix 29
AD2
N
185 186Right-handed 310
Helix 30
AD3
N
234 245Right-handed alpha
Helix 31
AD4
O
55 58Right-handed 310
Helix 32
AD5
O
60 60Right-handed 310
Helix 33
AD6
O
60 62Right-handed 310
Helix 34
AD7
O
125 130Right-handed alpha
Helix 35
AD8
O
164 171Right-handed alpha
Helix 36
AD9
O
185 186Right-handed 310
Helix 37
AE1
O
234 245Right-handed alpha
Helix 38
AE2
P
55 58Right-handed 310
Helix 39
AE3
P
60 60Right-handed 310
Helix 40
AE4
P
60 62Right-handed 310
Helix 41
AE5
P
125 130Right-handed alpha
Helix 42
AE6
P
164 171Right-handed alpha
Helix 43
AE7
P
185 186Right-handed 310
Helix 44
AE8
P
231 245Right-handed alpha
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There are 32 sheets in PDB entry 1DX5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
359 362first strand
Strand 2
I
368 371anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
376 379first strand
Strand 2
I
382 388anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
394 396first strand
Strand 2
I
420 423anti-parallel
Strand 3
I
413 416anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
398 399first strand
Strand 2
I
407 408anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
436 439first strand
Strand 2
I
444 448anti-parallel
Strand 3
I
455 458anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
359 362first strand
Strand 2
J
368 371anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
376 379first strand
Strand 2
J
382 388anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
394 396first strand
Strand 2
J
420 423anti-parallel
Strand 3
J
413 416anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
398 399first strand
Strand 2
J
407 408anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
436 439first strand
Strand 2
J
444 447anti-parallel
Strand 3
J
456 458anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
359 362first strand
Strand 2
K
368 371anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
376 379first strand
Strand 2
K
382 388anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
394 396first strand
Strand 2
K
420 423anti-parallel
Strand 3
K
413 416anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
398 400first strand
Strand 2
K
406 408anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
436 439first strand
Strand 2
K
444 447anti-parallel
Strand 3
K
456 458anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
359 362first strand
Strand 2
L
368 371anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
376 379first strand
Strand 2
L
382 388anti-parallel
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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
394 396first strand
Strand 2
L
420 423anti-parallel
Strand 3
L
413 416anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
398 400first strand
Strand 2
L
406 408anti-parallel
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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
436 439first strand
Strand 2
L
444 447anti-parallel
Strand 3
L
457 458anti-parallel
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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
20 21first strand
Strand 2
M
156 161anti-parallel
Strand 3
M
135 140anti-parallel
Strand 4
M
198 202anti-parallel
Strand 5
M
207 215anti-parallel
Strand 6
M
226 230anti-parallel
Strand 7
M
180 183anti-parallel
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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
81 83first strand
Strand 2
M
64 68anti-parallel
Strand 3
M
30 35anti-parallel
Strand 4
M
39 46anti-parallel
Strand 5
M
51 54anti-parallel
Strand 6
M
104 108anti-parallel
Strand 7
M
85 90anti-parallel
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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
60 60first strand
Strand 2
M
60 60anti-parallel
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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
20 21first strand
Strand 2
N
156 161anti-parallel
Strand 3
N
135 140anti-parallel
Strand 4
N
198 202anti-parallel
Strand 5
N
207 215anti-parallel
Strand 6
N
226 230anti-parallel
Strand 7
N
180 183anti-parallel
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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
81 83first strand
Strand 2
N
64 68anti-parallel
Strand 3
N
30 35anti-parallel
Strand 4
N
39 46anti-parallel
Strand 5
N
51 54anti-parallel
Strand 6
N
104 108anti-parallel
Strand 7
N
85 90anti-parallel
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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
60 60first strand
Strand 2
N
60 60anti-parallel
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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
20 21first strand
Strand 2
O
156 161anti-parallel
Strand 3
O
135 140anti-parallel
Strand 4
O
198 202anti-parallel
Strand 5
O
207 215anti-parallel
Strand 6
O
226 230anti-parallel
Strand 7
O
180 183anti-parallel
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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
81 83first strand
Strand 2
O
64 68anti-parallel
Strand 3
O
30 35anti-parallel
Strand 4
O
39 46anti-parallel
Strand 5
O
51 54anti-parallel
Strand 6
O
104 108anti-parallel
Strand 7
O
85 90anti-parallel
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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
60 60first strand
Strand 2
O
60 60anti-parallel
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There are 7 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
20 21first strand
Strand 2
P
156 161anti-parallel
Strand 3
P
135 140anti-parallel
Strand 4
P
198 202anti-parallel
Strand 5
P
207 215anti-parallel
Strand 6
P
226 230anti-parallel
Strand 7
P
180 183anti-parallel
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There are 7 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
81 83first strand
Strand 2
P
64 68anti-parallel
Strand 3
P
30 35anti-parallel
Strand 4
P
39 46anti-parallel
Strand 5
P
51 54anti-parallel
Strand 6
P
104 108anti-parallel
Strand 7
P
85 90anti-parallel
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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
60 60first strand
Strand 2
P
60 60anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il