Analysis of interatomic Contacts of Structural Units in PDB entry:
1DXO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DXO entry

There are 4 chains in PDB entry 1DXO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1LYS 273
B
 VAL 1LYS 273
C
 VAL 1LYS 273
D
 VAL 1LYS 273
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 1DXO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 32Right-handed alpha
Helix 2
2
A
51 54Right-handed 310
Helix 3
3
A
61 65Right-handed 310
Helix 4
4
A
66 78Right-handed alpha
Helix 5
5
A
81 94Right-handed alpha
Helix 6
6
A
109 120Right-handed alpha
Helix 7
7
A
131 135Right-handed 310
Helix 8
8
A
151 156Right-handed 310
Helix 9
9
A
163 173Right-handed alpha
Helix 10
10
A
176 180Right-handed 310
Helix 11
11
A
191 195Right-handed 310
Helix 12
12
A
196 211Right-handed alpha
Helix 13
13
A
212 217Right-handed 310
Helix 14
14
A
224 227Right-handed 310
Helix 15
15
A
239 247Right-handed alpha
Helix 16
16
B
16 32Right-handed alpha
Helix 17
17
B
41 45Right-handed alpha
Helix 18
18
B
51 54Right-handed 310
Helix 19
19
B
66 78Right-handed alpha
Helix 20
20
B
81 94Right-handed alpha
Helix 21
21
B
109 120Right-handed alpha
Helix 22
22
B
127 131Right-handed 310
Helix 23
23
B
131 135Right-handed 310
Helix 24
24
B
151 156Right-handed 310
Helix 25
25
B
163 173Right-handed alpha
Helix 26
26
B
176 180Right-handed 310
Helix 27
27
B
191 195Right-handed 310
Helix 28
28
B
196 212Right-handed alpha
Helix 29
29
B
213 217Right-handed 310
Helix 30
30
B
224 227Right-handed 310
Helix 31
31
B
239 247Right-handed alpha
Helix 32
32
C
16 32Right-handed alpha
Helix 33
33
C
51 54Right-handed 310
Helix 34
34
C
66 78Right-handed alpha
Helix 35
35
C
81 94Right-handed alpha
Helix 36
36
C
109 120Right-handed alpha
Helix 37
37
C
127 131Right-handed 310
Helix 38
38
C
131 135Right-handed 310
Helix 39
39
C
151 156Right-handed 310
Helix 40
40
C
163 173Right-handed alpha
Helix 41
41
C
176 180Right-handed 310
Helix 42
42
C
191 195Right-handed 310
Helix 43
43
C
196 212Right-handed alpha
Helix 44
44
C
213 217Right-handed 310
Helix 45
45
C
224 227Right-handed 310
Helix 46
46
C
239 247Right-handed alpha
Helix 47
47
D
16 32Right-handed alpha
Helix 48
48
D
51 54Right-handed 310
Helix 49
49
D
61 65Right-handed 310
Helix 50
50
D
66 78Right-handed alpha
Helix 51
51
D
81 94Right-handed alpha
Helix 52
52
D
109 120Right-handed alpha
Helix 53
53
D
131 135Right-handed 310
Helix 54
54
D
151 156Right-handed 310
Helix 55
55
D
163 173Right-handed alpha
Helix 56
56
D
176 180Right-handed 310
Helix 57
57
D
191 195Right-handed 310
Helix 58
58
D
196 212Right-handed alpha
Helix 59
59
D
213 217Right-handed 310
Helix 60
60
D
224 227Right-handed 310
Helix 61
61
D
239 247Right-handed alpha
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There are 12 sheets in PDB entry 1DXO. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, A, DB, C,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 40first strand
Strand 2
A
4 9parallel
Strand 3
A
96 102parallel
Strand 4
A
141 147parallel
Strand 5
A
187 189anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 40first strand
Strand 2
A
4 9parallel
Strand 3
A
96 102parallel
Strand 4
A
141 147parallel
Strand 5
A
182 183parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 189first strand
Strand 2
A
141 147anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 40first strand
Strand 2
B
4 9parallel
Strand 3
B
96 102parallel
Strand 4
B
141 147parallel
Strand 5
B
187 189anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 40first strand
Strand 2
B
4 9parallel
Strand 3
B
96 102parallel
Strand 4
B
141 147parallel
Strand 5
B
182 183parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 189first strand
Strand 2
B
141 147anti-parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 40first strand
Strand 2
C
4 9parallel
Strand 3
C
96 102parallel
Strand 4
C
141 147parallel
Strand 5
C
187 189anti-parallel
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There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 40first strand
Strand 2
C
4 9parallel
Strand 3
C
96 102parallel
Strand 4
C
141 147parallel
Strand 5
C
182 183parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
187 189first strand
Strand 2
C
141 147anti-parallel
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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
35 40first strand
Strand 2
D
4 9parallel
Strand 3
D
96 102parallel
Strand 4
D
141 147parallel
Strand 5
D
187 189anti-parallel
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There are 5 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
35 40first strand
Strand 2
D
4 9parallel
Strand 3
D
96 102parallel
Strand 4
D
141 147parallel
Strand 5
D
182 183parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
187 189first strand
Strand 2
D
141 147anti-parallel
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