Analysis of interatomic Contacts of Structural Units in PDB entry:
1DXY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DXY entry

There is 1 chain in PDB entry 1DXY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 1DXY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 23Right-handed 310
Helix 2
2
A
38 42Right-handed 310
Helix 3
3
A
58 67Right-handed alpha
Helix 4
4
A
84 89Right-handed alpha
Helix 5
5
A
102 117Right-handed alpha
Helix 6
6
A
120 128Right-handed alpha
Helix 7
7
A
132 136Right-handed alpha
Helix 8
8
A
143 145Right-handed 310
Helix 9
9
A
155 167Right-handed alpha
Helix 10
10
A
191 197Right-handed alpha
Helix 11
11
A
209 211Right-handed 310
Helix 12
12
A
217 222Right-handed alpha
Helix 13
13
A
240 248Right-handed alpha
Helix 14
14
A
263 273Right-handed alpha
Helix 15
15
A
279 285Right-handed alpha
Helix 16
16
A
301 321Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 1DXY. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 29first strand
Strand 2
A
2 5parallel
Strand 3
A
47 50parallel
Strand 4
A
71 74parallel
Strand 5
A
93 95parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 174first strand
Strand 2
A
147 151parallel
Strand 3
A
200 203parallel
Strand 4
A
227 231parallel
Strand 5
A
252 257parallel
Strand 6
A
290 292parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il