Analysis of interatomic Contacts of Structural Units in PDB entry:
1DY6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DY6 entry

There are 2 chains in PDB entry 1DY6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 24ASP 291
B
 ASN 24ASP 291
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 1DY6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
A1
A
25 40Right-handed alpha
Helix 2
A2
A
69 86Right-handed alpha
Helix 3
A3
A
106 112Right-handed alpha
Helix 4
A4
A
119 129Right-handed alpha
Helix 5
A5
A
131 141Right-handed alpha
Helix 6
A6
A
143 155Right-handed alpha
Helix 7
A7
A
167 171Right-handed 310
Helix 8
A8
A
182 195Right-handed alpha
Helix 9
A9
A
200 213Right-handed alpha
Helix 10
A10
A
220 225Right-handed 310
Helix 11
A11
A
275 290Right-handed alpha
Helix 12
B1
B
25 40Right-handed alpha
Helix 13
B2
B
69 86Right-handed alpha
Helix 14
B3
B
106 112Right-handed alpha
Helix 15
B4
B
119 129Right-handed alpha
Helix 16
B5
B
131 141Right-handed alpha
Helix 17
B6
B
143 155Right-handed alpha
Helix 18
B7
B
167 171Right-handed 310
Helix 19
B8
B
182 195Right-handed alpha
Helix 20
B9
B
200 213Right-handed alpha
Helix 21
B10
B
220 225Right-handed 310
Helix 22
B11
B
275 290Right-handed alpha
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There are 6 sheets in PDB entry 1DY6. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 50first strand
Strand 2
A
56 60anti-parallel
Strand 3
A
230 237anti-parallel
Strand 4
A
244 251anti-parallel
Strand 5
A
259 267anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
180 181anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
117 118anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 50first strand
Strand 2
B
56 60anti-parallel
Strand 3
B
230 237anti-parallel
Strand 4
B
244 251anti-parallel
Strand 5
B
259 267anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 67first strand
Strand 2
B
180 181anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 95first strand
Strand 2
B
117 118anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il