Analysis of interatomic Contacts of Structural Units in PDB entry:
1DYP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DYP entry

There is 1 chain in PDB entry 1DYP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 27VAL 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 1DYP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
43 46Right-handed 310
Helix 2
2
A
97 100Right-handed 310
Helix 3
3
A
200 205Right-handed alpha
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There are 5 sheets in PDB entry 1DYP. Click on sheet of interest to get list of strands forming it: A, A1, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
284 296first strand
Strand 3
A
80 96first strand
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There are 6 strands in A1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
284 296first strand
Strand 3
A
124 131first strand
Strand 4
A
219 225anti-parallel
Strand 5
A
229 234anti-parallel
Strand 6
A
237 243anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 58first strand
Strand 2
A
114 121first strand
Strand 3
A
251 259first strand
Strand 4
A
139 146first strand
Strand 5
A
159 168first strand
Strand 6
A
182 188anti-parallel
Strand 7
A
191 195first strand
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 179first strand
Strand 2
A
207 209anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 267first strand
Strand 2
A
270 273anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il