Analysis of interatomic Contacts of Structural Units in PDB entry:
1DYS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DYS entry

There are 2 chains in PDB entry 1DYS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3ALA 347
B
 GLY 3ALA 347
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 1DYS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 30Right-handed alpha
Helix 2
2
A
33 47Right-handed alpha
Helix 3
3
A
56 58Right-handed 310
Helix 4
4
A
59 75Right-handed alpha
Helix 5
5
A
92 96Right-handed 310
Helix 6
6
A
103 106Right-handed 310
Helix 7
7
A
107 116Right-handed alpha
Helix 8
8
A
116 127Right-handed alpha
Helix 9
9
A
139 147Right-handed alpha
Helix 10
10
A
149 170Right-handed alpha
Helix 11
11
A
183 188Right-handed alpha
Helix 12
12
A
189 191Right-handed 310
Helix 13
13
A
192 208Right-handed alpha
Helix 14
14
A
232 236Right-handed 310
Helix 15
15
A
242 256Right-handed alpha
Helix 16
16
A
331 341Right-handed alpha
Helix 17
17
B
14 31Right-handed alpha
Helix 18
18
B
33 47Right-handed alpha
Helix 19
19
B
56 58Right-handed 310
Helix 20
20
B
59 75Right-handed alpha
Helix 21
21
B
92 96Right-handed 310
Helix 22
22
B
103 106Right-handed 310
Helix 23
23
B
107 116Right-handed alpha
Helix 24
24
B
116 127Right-handed alpha
Helix 25
25
B
139 147Right-handed alpha
Helix 26
26
B
149 169Right-handed alpha
Helix 27
27
B
183 188Right-handed alpha
Helix 28
28
B
192 208Right-handed alpha
Helix 29
29
B
232 236Right-handed 310
Helix 30
30
B
242 257Right-handed alpha
Helix 31
31
B
331 341Right-handed alpha
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There are 10 sheets in PDB entry 1DYS. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 11first strand
Strand 2
A
79 85parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 53first strand
Strand 2
A
79 85anti-parallel
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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 307first strand
Strand 2
A
262 266parallel
Strand 3
A
215 218parallel
Strand 4
A
175 180parallel
Strand 5
A
132 136parallel
Strand 6
A
79 85parallel
Strand 7
A
51 53anti-parallel
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There are 7 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 307first strand
Strand 2
A
262 266parallel
Strand 3
A
215 218parallel
Strand 4
A
175 180parallel
Strand 5
A
132 136parallel
Strand 6
A
79 85parallel
Strand 7
A
10 11parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 271first strand
Strand 2
A
288 289anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 11first strand
Strand 2
B
79 85parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 53first strand
Strand 2
B
79 85anti-parallel
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There are 7 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
303 307first strand
Strand 2
B
262 266parallel
Strand 3
B
215 218parallel
Strand 4
B
175 180parallel
Strand 5
B
132 136parallel
Strand 6
B
79 85parallel
Strand 7
B
51 53anti-parallel
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There are 7 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
303 307first strand
Strand 2
B
262 266parallel
Strand 3
B
215 218parallel
Strand 4
B
175 180parallel
Strand 5
B
132 136parallel
Strand 6
B
79 85parallel
Strand 7
B
10 11parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
270 271first strand
Strand 2
B
288 289anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il