Analysis of interatomic Contacts of Structural Units in PDB entry:
1DZ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DZ9 entry

There are 2 chains in PDB entry 1DZ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 11VAL 414
B
 ASN 10VAL 414
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 1DZ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 22Right-handed 310
Helix 2
2
A
33 36Right-handed 310
Helix 3
3
A
37 43Right-handed alpha
Helix 4
4
A
44 47Right-handed 310
Helix 5
5
A
67 77Right-handed alpha
Helix 6
6
A
89 96Right-handed alpha
Helix 7
7
A
107 120Right-handed alpha
Helix 8
8
A
120 143Right-handed alpha
Helix 9
9
A
150 154Right-handed alpha
Helix 10
10
A
156 168Right-handed alpha
Helix 11
11
A
170 172Right-handed 310
Helix 12
12
A
173 186Right-handed alpha
Helix 13
13
A
192 214Right-handed alpha
Helix 14
14
A
218 225Right-handed alpha
Helix 15
15
A
234 251Right-handed alpha
Helix 16
16
A
251 266Right-handed alpha
Helix 17
17
A
267 277Right-handed alpha
Helix 18
18
A
280 292Right-handed alpha
Helix 19
19
A
323 328Right-handed alpha
Helix 20
20
A
352 356Right-handed 310
Helix 21
21
A
357 358Right-handed 310
Helix 22
22
A
359 378Right-handed alpha
Helix 23
23
A
407 411Right-handed 310
Helix 24
24
B
19 22Right-handed 310
Helix 25
25
B
33 36Right-handed 310
Helix 26
26
B
37 43Right-handed alpha
Helix 27
27
B
44 47Right-handed 310
Helix 28
28
B
57 61Right-handed 310
Helix 29
29
B
67 77Right-handed alpha
Helix 30
30
B
89 96Right-handed alpha
Helix 31
31
B
107 120Right-handed alpha
Helix 32
32
B
120 143Right-handed alpha
Helix 33
33
B
150 154Right-handed alpha
Helix 34
34
B
156 168Right-handed alpha
Helix 35
35
B
170 172Right-handed 310
Helix 36
36
B
173 186Right-handed alpha
Helix 37
37
B
192 214Right-handed alpha
Helix 38
38
B
218 225Right-handed alpha
Helix 39
39
B
234 251Right-handed alpha
Helix 40
40
B
251 267Right-handed alpha
Helix 41
41
B
267 277Right-handed alpha
Helix 42
42
B
280 292Right-handed alpha
Helix 43
43
B
323 328Right-handed alpha
Helix 44
44
B
352 356Right-handed 310
Helix 45
45
B
359 378Right-handed alpha
Helix 46
46
B
407 411Right-handed 310
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There are 6 sheets in PDB entry 1DZ9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 56first strand
Strand 2
A
62 65anti-parallel
Strand 3
A
317 320parallel
Strand 4
A
297 300anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 149first strand
Strand 2
A
403 405anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 307first strand
Strand 2
A
310 312anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 56first strand
Strand 2
B
62 65anti-parallel
Strand 3
B
317 320parallel
Strand 4
B
297 300anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 149first strand
Strand 2
B
403 405anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
305 307first strand
Strand 2
B
310 312anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il