Analysis of interatomic Contacts of Structural Units in PDB entry:
1DZI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DZI entry

There are 19 chains in PDB entry 1DZI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 142GLY 326
B
 GLY 1PRO 2
B
 GLY 4PRO 5
B
 GLY 7PHE 8
B
 GLY 10PRO 14
B
 GLY 16PRO 17
B
 GLY 19PRO 20
C
 GLY 1PRO 2
C
 GLY 4PRO 5
C
 GLY 7PHE 8
C
 GLY 10PRO 14
C
 GLY 16PRO 17
C
 GLY 19PRO 20
D
 GLY 1PRO 2
D
 GLY 4PRO 5
D
 GLY 7PHE 8
D
 GLY 10PRO 14
D
 GLY 16PRO 17
D
 GLY 19PRO 20
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 9 helices in PDB entry 1DZI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
158 172Right-handed alpha
Helix 2
2
A
202 211Right-handed alpha
Helix 3
3
A
222 234Right-handed alpha
Helix 4
4
A
236 240Right-handed 310
Helix 5
5
A
259 261Right-handed 310
Helix 6
6
A
262 273Right-handed alpha
Helix 7
7
A
290 304Right-handed alpha
Helix 8
8
A
307 311Right-handed alpha
Helix 9
9
A
317 325Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 1DZI.

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 314first strand
Strand 2
A
275 281parallel
Strand 3
A
246 253parallel
Strand 4
A
144 151parallel
Strand 5
A
180 187parallel
Strand 6
A
191 195anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il