Analysis of interatomic Contacts of Structural Units in PDB entry:
1DZN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DZN entry

There are 2 chains in PDB entry 1DZN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 6LEU 560
B
 ALA 6LEU 560
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 1DZN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 33Right-handed alpha
Helix 2
2
A
79 94Right-handed alpha
Helix 3
3
A
147 158Right-handed alpha
Helix 4
4
A
159 162Right-handed 310
Helix 5
5
A
175 183Right-handed alpha
Helix 6
6
A
193 196Right-handed 310
Helix 7
7
A
213 217Right-handed 310
Helix 8
8
A
222 226Right-handed 310
Helix 9
9
A
229 233Right-handed 310
Helix 10
10
A
236 241Right-handed 310
Helix 11
11
A
249 255Right-handed 310
Helix 12
12
A
287 302Right-handed alpha
Helix 13
13
A
314 322Right-handed alpha
Helix 14
14
A
323 327Right-handed 310
Helix 15
15
A
335 346Right-handed alpha
Helix 16
16
A
360 376Right-handed alpha
Helix 17
17
A
385 389Right-handed 310
Helix 18
18
A
393 402Right-handed alpha
Helix 19
19
A
408 416Right-handed 310
Helix 20
20
A
432 451Right-handed alpha
Helix 21
21
A
477 498Right-handed alpha
Helix 22
22
A
506 508Right-handed 310
Helix 23
23
A
509 517Right-handed alpha
Helix 24
24
A
518 536Right-handed alpha
Helix 25
25
A
544 548Right-handed 310
Helix 26
26
A
554 559Right-handed alpha
Helix 27
27
B
17 33Right-handed alpha
Helix 28
28
B
79 94Right-handed alpha
Helix 29
29
B
147 158Right-handed alpha
Helix 30
30
B
159 162Right-handed 310
Helix 31
31
B
175 182Right-handed alpha
Helix 32
32
B
193 196Right-handed 310
Helix 33
33
B
213 217Right-handed 310
Helix 34
34
B
222 226Right-handed 310
Helix 35
35
B
249 255Right-handed 310
Helix 36
36
B
285 287Right-handed 310
Helix 37
37
B
288 302Right-handed alpha
Helix 38
38
B
314 322Right-handed alpha
Helix 39
39
B
323 327Right-handed 310
Helix 40
40
B
335 346Right-handed alpha
Helix 41
41
B
360 376Right-handed alpha
Helix 42
42
B
385 389Right-handed 310
Helix 43
43
B
393 402Right-handed alpha
Helix 44
44
B
408 416Right-handed 310
Helix 45
45
B
432 451Right-handed alpha
Helix 46
46
B
477 498Right-handed alpha
Helix 47
47
B
506 508Right-handed 310
Helix 48
48
B
509 517Right-handed alpha
Helix 49
49
B
518 536Right-handed alpha
Helix 50
50
B
544 548Right-handed 310
Helix 51
51
B
554 559Right-handed alpha
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There are 10 sheets in PDB entry 1DZN. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 39first strand
Strand 2
A
73 75anti-parallel
Strand 3
A
119 122parallel
Strand 4
A
97 100parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 134first strand
Strand 2
A
139 142anti-parallel
Strand 3
A
265 268anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 211first strand
Strand 2
A
201 203anti-parallel
Strand 3
A
261 264anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 384first strand
Strand 2
A
276 283anti-parallel
Strand 3
A
351 358anti-parallel
Strand 4
A
310 313anti-parallel
Strand 5
A
456 460anti-parallel
Strand 6
A
465 474anti-parallel
Strand 7
A
420 425anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 430first strand
Strand 2
A
464 466anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 39first strand
Strand 2
B
73 75anti-parallel
Strand 3
B
119 122parallel
Strand 4
B
97 100parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 134first strand
Strand 2
B
139 142anti-parallel
Strand 3
B
265 268anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 211first strand
Strand 2
B
201 203anti-parallel
Strand 3
B
261 264anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
382 384first strand
Strand 2
B
276 283anti-parallel
Strand 3
B
351 358anti-parallel
Strand 4
B
310 313anti-parallel
Strand 5
B
456 460anti-parallel
Strand 6
B
465 474anti-parallel
Strand 7
B
420 425anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
428 430first strand
Strand 2
B
464 466anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il