Analysis of interatomic Contacts of Structural Units in PDB entry:
1DZQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DZQ entry

There are 4 chains in PDB entry 1DZQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3GLU 239
B
 SER 3GLU 239
C
 SER 3GLU 239
D
 SER 3GLU 239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 1DZQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
104 108Right-handed 310
Helix 2
2
A
117 121Right-handed 310
Helix 3
3
A
201 206Right-handed alpha
Helix 4
4
A
220 224Right-handed 310
Helix 5
5
B
104 108Right-handed 310
Helix 6
6
B
117 121Right-handed 310
Helix 7
7
B
201 206Right-handed alpha
Helix 8
8
B
220 224Right-handed 310
Helix 9
9
C
104 108Right-handed 310
Helix 10
10
C
117 121Right-handed 310
Helix 11
11
C
201 206Right-handed alpha
Helix 12
12
C
220 224Right-handed 310
Helix 13
13
D
104 108Right-handed 310
Helix 14
14
D
117 121Right-handed 310
Helix 15
15
D
201 206Right-handed alpha
Helix 16
16
D
220 224Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 1DZQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 10first strand
Strand 2
A
228 237anti-parallel
Strand 3
A
68 76anti-parallel
Strand 4
A
167 175anti-parallel
Strand 5
A
180 187anti-parallel
Strand 6
A
192 199anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 24first strand
Strand 2
A
46 52anti-parallel
Strand 3
A
210 218anti-parallel
Strand 4
A
87 94anti-parallel
Strand 5
A
123 128anti-parallel
Strand 6
A
144 149anti-parallel
Strand 7
A
156 159anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 10first strand
Strand 2
B
228 237anti-parallel
Strand 3
B
68 76anti-parallel
Strand 4
B
167 175anti-parallel
Strand 5
B
180 187anti-parallel
Strand 6
B
192 199anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 24first strand
Strand 2
B
46 52anti-parallel
Strand 3
B
210 218anti-parallel
Strand 4
B
87 94anti-parallel
Strand 5
B
123 128anti-parallel
Strand 6
B
144 149anti-parallel
Strand 7
B
156 159anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 10first strand
Strand 2
C
228 237anti-parallel
Strand 3
C
68 76anti-parallel
Strand 4
C
167 175anti-parallel
Strand 5
C
180 187anti-parallel
Strand 6
C
192 199anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
20 24first strand
Strand 2
C
46 52anti-parallel
Strand 3
C
210 218anti-parallel
Strand 4
C
87 94anti-parallel
Strand 5
C
123 128anti-parallel
Strand 6
C
144 149anti-parallel
Strand 7
C
156 159anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 10first strand
Strand 2
D
228 237anti-parallel
Strand 3
D
68 76anti-parallel
Strand 4
D
167 175anti-parallel
Strand 5
D
180 187anti-parallel
Strand 6
D
192 199anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
20 24first strand
Strand 2
D
46 52anti-parallel
Strand 3
D
210 218anti-parallel
Strand 4
D
87 94anti-parallel
Strand 5
D
123 128anti-parallel
Strand 6
D
144 149anti-parallel
Strand 7
D
156 159anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il