Analysis of interatomic Contacts of Structural Units in PDB entry:
1E05


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1E05 entry

There are 2 chains in PDB entry 1E05 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
I
 SER 3VAL 431
L
 SER 3LYS 432
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 1E05. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
14
I
11 15Right-handed 310
Helix 2
15
I
45 69Right-handed alpha
Helix 3
16
I
79 91Right-handed alpha
Helix 4
17
I
92 94Right-handed 310
Helix 5
18
I
95 106Right-handed alpha
Helix 6
19
I
107 111Right-handed 310
Helix 7
20
I
117 131Right-handed alpha
Helix 8
21
I
155 167Right-handed alpha
Helix 9
22
I
178 193Right-handed alpha
Helix 10
23
I
230 234Right-handed 310
Helix 11
24
I
264 266Right-handed 310
Helix 12
25
I
291 299Right-handed alpha
Helix 13
26
I
300 311Right-handed alpha
Helix 14
27
I
331 338Right-handed alpha
Helix 15
28
I
341 345Right-handed 310
Helix 16
1
L
42 69Right-handed alpha
Helix 17
2
L
79 92Right-handed alpha
Helix 18
3
L
95 106Right-handed alpha
Helix 19
4
L
107 111Right-handed 310
Helix 20
5
L
117 132Right-handed alpha
Helix 21
6
L
155 167Right-handed alpha
Helix 22
7
L
178 193Right-handed alpha
Helix 23
8
L
230 234Right-handed 310
Helix 24
9
L
264 266Right-handed 310
Helix 25
10
L
292 298Right-handed alpha
Helix 26
11
L
300 311Right-handed alpha
Helix 27
12
L
331 338Right-handed alpha
Helix 28
13
L
341 345Right-handed 310
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There are 7 sheets in PDB entry 1E05. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
76 78first strand
Strand 2
L
419 426anti-parallel
Strand 3
L
408 414anti-parallel
Strand 4
L
279 285anti-parallel
Strand 5
L
268 273anti-parallel
Strand 6
L
250 262anti-parallel
Strand 7
L
312 322anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
169 173first strand
Strand 2
L
138 149parallel
Strand 3
L
213 224anti-parallel
Strand 4
L
379 390anti-parallel
Strand 5
L
364 375anti-parallel
Strand 6
L
323 330anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
235 240first strand
Strand 2
L
246 251anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
76 78first strand
Strand 2
I
419 426anti-parallel
Strand 3
I
408 414anti-parallel
Strand 4
I
279 285anti-parallel
Strand 5
I
268 273anti-parallel
Strand 6
I
259 262anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
170 173first strand
Strand 2
I
139 149parallel
Strand 3
I
213 222anti-parallel
Strand 4
I
366 375parallel
Strand 5
I
323 330anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
152 154first strand
Strand 2
I
354 356anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
235 240first strand
Strand 2
I
246 257anti-parallel
Strand 3
I
315 321anti-parallel
Strand 4
I
400 404parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il