Analysis of interatomic Contacts of Structural Units in PDB entry:
1E08


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1E08 entry

There are 3 chains in PDB entry 1E08 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PHE 27ALA 397
D
VAL 36GLU 123
E
ASP 2LEU 79
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 1E08. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
71 76Right-handed alpha
Helix 2
2
A
87 97Right-handed alpha
Helix 3
3
A
107 113Right-handed alpha
Helix 4
4
A
114 119Right-handed 310
Helix 5
5
A
125 128Right-handed 310
Helix 6
6
A
129 134Right-handed alpha
Helix 7
7
A
135 138Right-handed 310
Helix 8
8
A
146 165Right-handed alpha
Helix 9
9
A
179 190Right-handed alpha
Helix 10
10
A
193 197Right-handed 310
Helix 11
11
A
202 210Right-handed alpha
Helix 12
12
A
210 219Right-handed alpha
Helix 13
13
A
222 224Right-handed 310
Helix 14
14
A
234 240Right-handed alpha
Helix 15
15
A
241 247Right-handed 310
Helix 16
16
A
259 270Right-handed alpha
Helix 17
17
A
273 277Right-handed 310
Helix 18
18
A
290 294Right-handed 310
Helix 19
19
A
301 311Right-handed alpha
Helix 20
20
A
324 328Right-handed 310
Helix 21
21
A
353 365Right-handed alpha
Helix 22
22
A
381 386Right-handed alpha
Helix 23
23
D
38 55Right-handed alpha
Helix 24
24
D
61 64Right-handed 310
Helix 25
25
D
65 74Right-handed alpha
Helix 26
26
D
96 102Right-handed alpha
Helix 27
27
D
103 106Right-handed 310
Helix 28
28
D
112 116Right-handed 310
Helix 29
29
E
3 8Right-handed alpha
Helix 30
30
E
9 14Right-handed 310
Helix 31
31
E
33 45Right-handed alpha
Helix 32
32
E
55 64Right-handed alpha
Helix 33
33
E
67 76Right-handed alpha
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There are 4 sheets in PDB entry 1E08. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
50 52first strand
Strand 2
A
58 60anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
101 106first strand
Strand 2
A
226 231parallel
Strand 3
A
256 258parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
333 335first strand
Strand 2
A
348 351anti-parallel
Strand 3
A
374 376parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
338 340first strand
Strand 2
A
343 345anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il