Analysis of interatomic Contacts of Structural Units in PDB entry:
1E0F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1E0F entry

There are 9 chains in PDB entry 1E0F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
THR 1ARG 15
B
THR 1ARG 15
C
PHE 1ARG 15
D
ILE 16PHE 245
E
ILE 16GLN 244
F
ILE 16GLU 247
I
ILE 1LYS 57
J
ILE 1GLU 55
K
ILE 1LYS 57
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 1E0F. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
7 11Right-handed 310
Helix 2
2
A
14 14Right-handed alpha
Helix 3
10
B
7 11Right-handed 310
Helix 4
11
B
14 14Right-handed alpha
Helix 5
17
C
7 11Right-handed 310
Helix 6
18
C
14 14Right-handed alpha
Helix 7
3
D
55 58Right-handed 310
Helix 8
4
D
60 60Right-handed 310
Helix 9
5
D
60 63Right-handed 310
Helix 10
6
D
127 130Right-handed alpha
Helix 11
7
D
164 170Right-handed alpha
Helix 12
8
D
185 186Right-handed 310
Helix 13
9
D
231 243Right-handed alpha
Helix 14
12
E
55 58Right-handed 310
Helix 15
13
E
60 60Right-handed 310
Helix 16
14
E
125 130Right-handed alpha
Helix 17
15
E
164 172Right-handed alpha
Helix 18
16
E
230 241Right-handed alpha
Helix 19
19
F
55 58Right-handed 310
Helix 20
20
F
60 60Right-handed 310
Helix 21
21
F
60 63Right-handed 310
Helix 22
22
F
126 130Right-handed alpha
Helix 23
23
F
149 149Right-handed alpha
Helix 24
24
F
164 171Right-handed alpha
Helix 25
25
F
231 245Right-handed alpha
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There are 17 sheets in PDB entry 1E0F. Click on sheet of interest to get list of strands forming it: A, A1, B, C, D, E, E1, F, G, H, I, J, J1, K, L, M, N,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
20 21first strand
Strand 2
D
156 161anti-parallel
Strand 3
D
135 140anti-parallel
Strand 4
D
198 202anti-parallel
Strand 5
D
207 217anti-parallel
Strand 6
D
226 230anti-parallel
Strand 7
D
180 183anti-parallel
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There are 6 strands in A1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
20 21first strand
Strand 2
D
156 161anti-parallel
Strand 3
D
135 140anti-parallel
Strand 4
D
198 202anti-parallel
Strand 5
D
207 217anti-parallel
Strand 6
I
2 3parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
30 35first strand
Strand 2
D
39 46first strand
Strand 3
D
51 54anti-parallel
Strand 4
D
104 108anti-parallel
Strand 5
D
81 90anti-parallel
Strand 6
D
65 68anti-parallel
Strand 7
D
30 35first strand
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
60 60first strand
Strand 2
D
60 60first strand
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
19 20first strand
Strand 2
I
25 26anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
20 21first strand
Strand 2
E
156 163anti-parallel
Strand 3
E
135 140anti-parallel
Strand 4
E
198 203anti-parallel
Strand 5
E
206 217anti-parallel
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There are 5 strands in E1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
20 21first strand
Strand 2
E
156 163anti-parallel
Strand 3
E
180 183anti-parallel
Strand 4
E
226 229anti-parallel
Strand 5
E
206 217anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
81 83first strand
Strand 2
E
65 68anti-parallel
Strand 3
E
30 35first strand
Strand 4
E
39 48first strand
Strand 5
E
51 54anti-parallel
Strand 6
E
104 108anti-parallel
Strand 7
E
85 90anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
60 60first strand
Strand 2
E
60 60first strand
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
13 14first strand
Strand 2
J
31 32anti-parallel
Strand 3
J
37 38anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
19 20first strand
Strand 2
J
25 26anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
20 21first strand
Strand 2
F
156 163anti-parallel
Strand 3
F
135 140anti-parallel
Strand 4
F
198 202anti-parallel
Strand 5
F
207 217anti-parallel
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There are 5 strands in J1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
20 21first strand
Strand 2
F
156 163anti-parallel
Strand 3
F
180 183anti-parallel
Strand 4
F
226 230anti-parallel
Strand 5
F
207 217anti-parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
30 35first strand
Strand 2
F
39 46first strand
Strand 3
F
51 54anti-parallel
Strand 4
F
104 108anti-parallel
Strand 5
F
81 90anti-parallel
Strand 6
F
65 68anti-parallel
Strand 7
F
30 35first strand
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
60 60first strand
Strand 2
F
60 60first strand
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
13 15first strand
Strand 2
K
30 32anti-parallel
Strand 3
K
37 39anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
19 20first strand
Strand 2
K
25 26anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il