Analysis of interatomic Contacts of Structural Units in PDB entry:
1E0J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1E0J entry

There are 6 chains in PDB entry 1E0J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 261	GLY 549
B	PRO 262	GLY 549
C	PRO 262	GLY 549
D	ILE 261	GLY 549
E	PRO 262	GLY 549
F	PRO 262	GLY 549

There are 68 helices in PDB entry 1E0J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	267	270	Right-handed 310
Helix 2	2	A	271	280	Right-handed alpha
Helix 3	3	A	317	330	Right-handed alpha
Helix 4	4	A	345	358	Right-handed alpha
Helix 5	5	A	361	364	Right-handed 310
Helix 6	6	A	365	375	Right-handed alpha
Helix 7	7	A	376	387	Right-handed alpha
Helix 8	8	A	401	415	Right-handed alpha
Helix 9	9	A	438	457	Right-handed alpha
Helix 10	10	A	474	476	Right-handed 310
Helix 11	11	A	482	485	Right-handed 310
Helix 12	12	A	491	496	Right-handed alpha
Helix 13	13	B	271	280	Right-handed alpha
Helix 14	14	B	294	300	Right-handed alpha
Helix 15	15	B	317	331	Right-handed alpha
Helix 16	16	B	345	358	Right-handed alpha
Helix 17	17	B	361	364	Right-handed 310
Helix 18	18	B	365	375	Right-handed alpha
Helix 19	19	B	376	387	Right-handed alpha
Helix 20	20	B	401	415	Right-handed alpha
Helix 21	21	B	438	457	Right-handed alpha
Helix 22	22	B	474	476	Right-handed 310
Helix 23	23	B	491	496	Right-handed alpha
Helix 24	24	C	271	280	Right-handed alpha
Helix 25	25	C	294	300	Right-handed alpha
Helix 26	26	C	317	331	Right-handed alpha
Helix 27	27	C	345	358	Right-handed alpha
Helix 28	28	C	365	375	Right-handed alpha
Helix 29	29	C	376	387	Right-handed alpha
Helix 30	30	C	401	415	Right-handed alpha
Helix 31	31	C	438	457	Right-handed alpha
Helix 32	32	C	474	476	Right-handed 310
Helix 33	33	C	482	485	Right-handed 310
Helix 34	34	C	491	496	Right-handed alpha
Helix 35	35	D	267	270	Right-handed 310
Helix 36	36	D	271	280	Right-handed alpha
Helix 37	37	D	294	300	Right-handed alpha
Helix 38	38	D	317	330	Right-handed alpha
Helix 39	39	D	345	358	Right-handed alpha
Helix 40	40	D	365	375	Right-handed alpha
Helix 41	41	D	376	387	Right-handed alpha
Helix 42	42	D	401	415	Right-handed alpha
Helix 43	43	D	438	457	Right-handed alpha
Helix 44	44	D	474	476	Right-handed 310
Helix 45	45	D	482	485	Right-handed 310
Helix 46	46	D	491	496	Right-handed alpha
Helix 47	47	E	271	280	Right-handed alpha
Helix 48	48	E	294	300	Right-handed alpha
Helix 49	49	E	317	331	Right-handed alpha
Helix 50	50	E	345	358	Right-handed alpha
Helix 51	51	E	361	364	Right-handed 310
Helix 52	52	E	365	375	Right-handed alpha
Helix 53	53	E	376	387	Right-handed alpha
Helix 54	54	E	401	415	Right-handed alpha
Helix 55	55	E	438	457	Right-handed alpha
Helix 56	56	E	474	476	Right-handed 310
Helix 57	57	E	491	496	Right-handed alpha
Helix 58	58	F	271	280	Right-handed alpha
Helix 59	59	F	294	300	Right-handed alpha
Helix 60	60	F	317	331	Right-handed alpha
Helix 61	61	F	345	358	Right-handed alpha
Helix 62	62	F	365	375	Right-handed alpha
Helix 63	63	F	376	387	Right-handed alpha
Helix 64	64	F	401	415	Right-handed alpha
Helix 65	65	F	438	457	Right-handed alpha
Helix 66	66	F	474	476	Right-handed 310
Helix 67	67	F	482	485	Right-handed 310
Helix 68	68	F	491	496	Right-handed alpha

There are 6 sheets in PDB entry 1E0J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	542	544	first strand
Strand 2	A	528	535	anti-parallel
Strand 3	A	513	521	anti-parallel
Strand 4	A	498	503	anti-parallel
Strand 5	A	307	312	parallel
Strand 6	A	459	464	parallel
Strand 7	A	420	424	parallel
Strand 8	A	337	341	parallel
Strand 9	A	391	393	parallel

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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	542	545	first strand
Strand 2	B	528	535	anti-parallel
Strand 3	B	513	521	anti-parallel
Strand 4	B	498	503	anti-parallel
Strand 5	B	307	312	parallel
Strand 6	B	459	464	parallel
Strand 7	B	420	424	parallel
Strand 8	B	337	341	parallel
Strand 9	B	391	393	parallel

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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	541	544	first strand
Strand 2	C	528	536	anti-parallel
Strand 3	C	513	521	anti-parallel
Strand 4	C	498	504	anti-parallel
Strand 5	C	307	312	parallel
Strand 6	C	459	463	parallel
Strand 7	C	420	424	parallel
Strand 8	C	337	341	parallel
Strand 9	C	391	393	parallel

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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	542	544	first strand
Strand 2	D	528	535	anti-parallel
Strand 3	D	513	521	anti-parallel
Strand 4	D	498	503	anti-parallel
Strand 5	D	307	312	parallel
Strand 6	D	459	464	parallel
Strand 7	D	420	424	parallel
Strand 8	D	337	341	parallel
Strand 9	D	391	393	parallel

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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	542	545	first strand
Strand 2	E	528	535	anti-parallel
Strand 3	E	513	521	anti-parallel
Strand 4	E	498	503	anti-parallel
Strand 5	E	307	312	parallel
Strand 6	E	459	464	parallel
Strand 7	E	420	424	parallel
Strand 8	E	337	341	parallel
Strand 9	E	391	393	parallel

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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	541	544	first strand
Strand 2	F	528	536	anti-parallel
Strand 3	F	513	521	anti-parallel
Strand 4	F	498	504	anti-parallel
Strand 5	F	307	312	parallel
Strand 6	F	459	463	parallel
Strand 7	F	420	424	parallel
Strand 8	F	337	341	parallel
Strand 9	F	391	393	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1E0J

Analysis of interatomic Contacts of Structural Units in PDB entry:
1E0J