Analysis of interatomic Contacts of Structural Units in PDB entry:
1E3J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1E3J entry

There is 1 chain in PDB entry 1E3J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 4GLN 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1E3J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 51Right-handed alpha
Helix 2
2
A
99 104Right-handed alpha
Helix 3
3
A
106 110Right-handed 310
Helix 4
4
A
144 150Right-handed alpha
Helix 5
5
A
150 165Right-handed alpha
Helix 6
6
A
178 191Right-handed alpha
Helix 7
7
A
201 211Right-handed alpha
Helix 8
8
A
225 237Right-handed alpha
Helix 9
9
A
250 261Right-handed alpha
Helix 10
10
A
280 286Right-handed alpha
Helix 11
11
A
300 310Right-handed alpha
Helix 12
12
A
315 317Right-handed 310
Helix 13
13
A
327 338Right-handed alpha
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There are 4 sheets in PDB entry 1E3J. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 132first strand
Strand 2
A
30 35anti-parallel
Strand 3
A
68 75anti-parallel
Strand 4
A
87 90anti-parallel
Strand 5
A
136 138anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 69first strand
Strand 2
A
37 40anti-parallel
Strand 3
A
344 348anti-parallel
Strand 4
A
319 324parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 293first strand
Strand 2
A
266 269parallel
Strand 3
A
243 246parallel
Strand 4
A
171 175parallel
Strand 5
A
194 199parallel
Strand 6
A
215 218parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 12first strand
Strand 2
A
15 20anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il