Analysis of interatomic Contacts of Structural Units in PDB entry:
1E5F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1E5F entry

There are 2 chains in PDB entry 1E5F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4LEU 396
B
 GLU 4LEU 396
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 1E5F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 15Right-handed alpha
Helix 2
2
A
39 48Right-handed alpha
Helix 3
3
A
61 76Right-handed alpha
Helix 4
4
A
85 98Right-handed alpha
Helix 5
5
A
111 120Right-handed alpha
Helix 6
6
A
120 125Right-handed alpha
Helix 7
7
A
138 144Right-handed alpha
Helix 8
8
A
165 175Right-handed alpha
Helix 9
9
A
194 199Right-handed 310
Helix 10
10
A
225 235Right-handed alpha
Helix 11
11
A
4 242Right-handed alpha
Helix 12
12
A
246 258Right-handed alpha
Helix 13
13
A
259 280Right-handed alpha
Helix 14
14
A
297 305Right-handed alpha
Helix 15
15
A
318 329Right-handed alpha
Helix 16
16
A
358 365Right-handed alpha
Helix 17
17
A
380 394Right-handed alpha
Helix 18
18
B
7 15Right-handed alpha
Helix 19
19
B
39 48Right-handed alpha
Helix 20
20
B
61 75Right-handed alpha
Helix 21
21
B
85 98Right-handed alpha
Helix 22
22
B
111 120Right-handed alpha
Helix 23
23
B
120 125Right-handed alpha
Helix 24
24
B
138 144Right-handed alpha
Helix 25
25
B
165 174Right-handed alpha
Helix 26
26
B
194 199Right-handed 310
Helix 27
27
B
225 235Right-handed alpha
Helix 28
28
A
4 242Right-handed alpha
Helix 29
29
B
246 258Right-handed alpha
Helix 30
30
B
259 280Right-handed alpha
Helix 31
31
B
297 305Right-handed alpha
Helix 32
32
B
318 329Right-handed alpha
Helix 33
33
B
358 365Right-handed alpha
Helix 34
34
B
380 394Right-handed alpha
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There are 4 sheets in PDB entry 1E5F. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 83first strand
Strand 2
A
220 224anti-parallel
Strand 3
A
202 206anti-parallel
Strand 4
A
180 184parallel
Strand 5
A
148 154parallel
Strand 6
A
103 107parallel
Strand 7
A
128 132parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 347first strand
Strand 2
A
371 375anti-parallel
Strand 3
A
311 316anti-parallel
Strand 4
A
284 288anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 83first strand
Strand 2
B
220 224anti-parallel
Strand 3
B
202 206anti-parallel
Strand 4
B
180 184parallel
Strand 5
B
148 154parallel
Strand 6
B
103 107parallel
Strand 7
B
128 132parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
345 348first strand
Strand 2
B
371 375anti-parallel
Strand 3
B
311 316anti-parallel
Strand 4
B
284 288anti-parallel
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