Analysis of interatomic Contacts of Structural Units in PDB entry:
1E5J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1E5J entry

There is 1 chain in PDB entry 1E5J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4SER 305
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 1E5J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 10Right-handed alpha
Helix 2
2
A
36 41Right-handed alpha
Helix 3
3
A
42 44Right-handed 310
Helix 4
4
A
45 55Right-handed alpha
Helix 5
5
A
77 93Right-handed alpha
Helix 6
6
A
107 110Right-handed 310
Helix 7
7
A
111 127Right-handed alpha
Helix 8
8
A
150 166Right-handed alpha
Helix 9
9
A
175 180Right-handed alpha
Helix 10
10
A
181 187Right-handed alpha
Helix 11
11
A
207 220Right-handed alpha
Helix 12
12
A
241 255Right-handed alpha
Helix 13
13
A
285 288Right-handed 310
Helix 14
14
A
290 304Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 1E5J. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 15first strand
Strand 2
A
18 20anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 261first strand
Strand 2
A
30 33parallel
Strand 3
A
60 66parallel
Strand 4
A
95 101parallel
Strand 5
A
132 135parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 173first strand
Strand 2
A
195 197parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 202first strand
Strand 2
A
228 230parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il