Analysis of interatomic Contacts of Structural Units in PDB entry:
1E5M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1E5M entry

There is 1 chain in PDB entry 1E5M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 6GLN 416
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 1E5M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 33Right-handed alpha
Helix 2
2
A
61 65Right-handed 310
Helix 3
3
A
67 73Right-handed alpha
Helix 4
4
A
75 93Right-handed alpha
Helix 5
5
A
100 102Right-handed 310
Helix 6
6
A
114 129Right-handed alpha
Helix 7
7
A
130 133Right-handed 310
Helix 8
8
A
136 142Right-handed alpha
Helix 9
9
A
144 155Right-handed alpha
Helix 10
10
A
165 167Right-handed 310
Helix 11
11
A
168 183Right-handed alpha
Helix 12
12
A
199 209Right-handed alpha
Helix 13
13
A
218 222Right-handed 310
Helix 14
14
A
247 253Right-handed alpha
Helix 15
15
A
280 295Right-handed alpha
Helix 16
16
A
297 301Right-handed 310
Helix 17
17
A
311 327Right-handed alpha
Helix 18
18
A
328 333Right-handed 310
Helix 19
19
A
338 343Right-handed alpha
Helix 20
20
A
345 347Right-handed 310
Helix 21
21
A
348 364Right-handed alpha
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There are 2 sheets in PDB entry 1E5M. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 109first strand
Strand 2
A
188 195parallel
Strand 3
A
238 246anti-parallel
Strand 4
A
9 17anti-parallel
Strand 5
A
259 268anti-parallel
Strand 6
A
406 413anti-parallel
Strand 7
A
395 402anti-parallel
Strand 8
A
303 305parallel
Strand 9
A
334 336parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
53 55anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il