Analysis of interatomic Contacts of Structural Units in PDB entry:
1E6J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1E6J entry

There are 3 chains in PDB entry 1E6J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 GLU 1PRO 219
L
 GLU 1ASN 210
P
 VAL 11GLY 220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 1E6J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
H
28 32Right-handed 310
Helix 2
2
H
62 65Right-handed 310
Helix 3
3
H
74 76Right-handed 310
Helix 4
4
H
87 91Right-handed 310
Helix 5
5
H
193 195Right-handed 310
Helix 6
6
H
207 210Right-handed 310
Helix 7
7
L
78 82Right-handed 310
Helix 8
8
L
119 125Right-handed alpha
Helix 9
9
L
181 186Right-handed alpha
Helix 10
10
P
16 31Right-handed alpha
Helix 11
11
P
35 44Right-handed alpha
Helix 12
12
P
48 58Right-handed alpha
Helix 13
13
P
62 84Right-handed alpha
Helix 14
14
P
100 105Right-handed alpha
Helix 15
15
P
110 119Right-handed alpha
Helix 16
16
P
125 146Right-handed alpha
Helix 17
17
P
149 153Right-handed 310
Helix 18
18
P
160 174Right-handed alpha
Helix 19
19
P
178 193Right-handed alpha
Helix 20
20
P
195 206Right-handed alpha
Helix 21
21
P
210 218Right-handed alpha
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There are 8 sheets in PDB entry 1E6J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 6first strand
Strand 2
H
17 25anti-parallel
Strand 3
H
78 84anti-parallel
Strand 4
H
68 73anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
114 118parallel
Strand 3
H
92 97anti-parallel
Strand 4
H
33 39anti-parallel
Strand 5
H
46 52anti-parallel
Strand 6
H
58 60anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
127 131first strand
Strand 2
H
142 152anti-parallel
Strand 3
H
182 191anti-parallel
Strand 4
H
170 172anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
158 161first strand
Strand 2
H
201 206anti-parallel
Strand 3
H
211 216anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
69 74anti-parallel
Strand 4
L
61 66anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
100 104parallel
Strand 3
L
83 89anti-parallel
Strand 4
L
32 37anti-parallel
Strand 5
L
44 47anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
112 116first strand
Strand 2
L
127 135anti-parallel
Strand 3
L
173 180anti-parallel
Strand 4
L
157 161anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
142 148first strand
Strand 2
L
189 196anti-parallel
Strand 3
L
203 208anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il